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FNDC9 fibronectin type III domain containing 9 [ Homo sapiens (human) ]

Gene ID: 408263, updated on 11-Jun-2021

Summary

Official Symbol
FNDC9provided by HGNC
Official Full Name
fibronectin type III domain containing 9provided by HGNC
Primary source
HGNC:HGNC:33547
See related
Ensembl:ENSG00000172568
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C5orf40
Expression
Biased expression in brain (RPKM 8.0) and adrenal (RPKM 2.8) See more
Orthologs
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Genomic context

See FNDC9 in Genome Data Viewer
Location:
5q33.3
Exon count:
2
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (157341598..157345677, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (156768606..156772685, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 71 member B Neighboring gene IL2 inducible T cell kinase Neighboring gene cytoplasmic FMR1 interacting protein 2 Neighboring gene NIPAL4 divergent transcript Neighboring gene ribosomal protein L26 pseudogene 18 Neighboring gene NIPA like domain containing 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC27121

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
fibronectin type III domain-containing protein 9
Names
fibronectin type-III domain-containing protein C5orf40

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001343.4NP_001001343.2  fibronectin type III domain-containing protein 9

    See identical proteins and their annotated locations for NP_001001343.2

    Status: VALIDATED

    Source sequence(s)
    AC016571, BC022570, DA173480, DB567325
    Consensus CDS
    CCDS4337.1
    UniProtKB/Swiss-Prot
    Q8TBE3
    Related
    ENSP00000310594.4, ENST00000312349.5
    Conserved Domains (1) summary
    pfam00041
    Location:276
    fn3; Fibronectin type III domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    157341598..157345677 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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