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Cspg4b chondroitin sulfate proteoglycan 4B [ Mus musculus (house mouse) ]

Gene ID: 408066, updated on 26-Sep-2022

Summary

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Official Symbol
Cspg4bprovided by MGI
Official Full Name
chondroitin sulfate proteoglycan 4Bprovided by MGI
Primary source
MGI:MGI:3040697
See related
Ensembl:ENSMUSG00000021763 AllianceGenome:MGI:3040697
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in limb E14.5 (RPKM 4.4), kidney adult (RPKM 2.0) and 13 other tissues See more
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Genomic context

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See Cspg4b in Genome Data Viewer
Location:
13; 13 D2.2
Exon count:
11
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (113429570..113507049)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (113293052..113370513)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene granzyme K Neighboring gene predicted gene, 41069 Neighboring gene endothelial cell-specific molecule 1 Neighboring gene predicted gene, 41070 Neighboring gene predicted gene, 41071 Neighboring gene RIKEN cDNA 4921509O07 gene Neighboring gene predicted gene, 31191

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  

General protein information

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Preferred Names
Chondroitin sulfate proteoglycan 4-like; uncharacterized protein LOC408066

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001378698.1 → NP_001365627.1  Chondroitin sulfate proteoglycan 4-like precursor

    Status: VALIDATED

    Source sequence(s)
    AC112157, AC124494
    UniProtKB/TrEMBL
    F6RXI4
    Related
    ENSMUSP00000119993.4, ENSMUST00000136755.10
    Conserved Domains (2) summary
    cd00110
    Location:26 → 175
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam16184
    Location:1455 → 1562
    Cadherin_3; Cadherin-like

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    113429570..113507049
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036158083.1 → XP_036013976.1  uncharacterized protein LOC408066 isoform X1

    Conserved Domains (2) summary
    cd00110
    Location:26 → 175
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam16184
    Location:1455 → 1562
    Cadherin_3; Cadherin-like

  2. XM_030247485.2 → XP_030103345.1  uncharacterized protein LOC408066 isoform X2

    Conserved Domains (2) summary
    cd00110
    Location:26 → 175
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam16184
    Location:1455 → 1554
    Cadherin_3; Cadherin-like

RNA

  1. XR_004938045.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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Research Materials