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Krt86 keratin 86 [ Rattus norvegicus (Norway rat) ]

Gene ID: 407760, updated on 21-Jul-2018

Summary

Official Symbol
Krt86provided by RGD
Official Full Name
keratin 86provided by RGD
Primary source
RGD:1303215
See related
Ensembl:ENSRNOG00000008367 Vega:OTTRNOG00000001641
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Kb26
Expression
Restricted expression toward (RPKM 36.3) See more

Genomic context

See Krt86 in Genome Data Viewer
Location:
7q36
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (143122285..143128932)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 7 NC_005106.3 (140922818..140929091)

Chromosome 7 - NC_005106.4Genomic Context describing neighboring genes Neighboring gene similar to RIKEN cDNA 1700011A15 Neighboring gene keratin 81 Neighboring gene type II keratin 23 Neighboring gene keratin 85

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from BioSystems

General gene information

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
structural molecule activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
keratin filament IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
keratin, type II cuticular Hb6
Names
keratin 86, type II
type II keratin Kb26

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001008810.1NP_001008810.1  keratin, type II cuticular Hb6

    See identical proteins and their annotated locations for NP_001008810.1

    Status: PROVISIONAL

    Source sequence(s)
    BK003975
    UniProtKB/TrEMBL
    Q6IG10
    Related
    ENSRNOP00000060052.3, ENSRNOT00000067422.4
    Conserved Domains (4) summary
    pfam00038
    Location:105416
    Filament; Intermediate filament protein
    pfam16208
    Location:4102
    Keratin_2_head; Keratin type II head
    cl09111
    Location:225356
    Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...
    cl23720
    Location:315383
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005106.4 Reference Rnor_6.0 Primary Assembly

    Range
    143122285..143128932
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017595034.1XP_017450523.1  keratin, type II cuticular Hb6 isoform X1

    UniProtKB/TrEMBL
    A0A0G2K126
    Related
    ENSRNOP00000071675.1, OTTRNOP00000001492, ENSRNOT00000082542.1, OTTRNOT00000002581

Alternate Rn_Celera

Genomic

  1. AC_000075.1 Alternate Rn_Celera

    Range
    129054496..129060769
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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