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junba JunB proto-oncogene, AP-1 transcription factor subunit a [ Danio rerio (zebrafish) ]

Gene ID: 407086, updated on 22-Nov-2020

Summary

Official Symbol
junbaprovided by ZNC
Official Full Name
JunB proto-oncogene, AP-1 transcription factor subunit aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2172
See related
Ensembl:ENSDARG00000074378
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
jun; junb; wu:fa92h0; zgc:64066; wu:cegs277; wu:fa92h07; wu:fq24h03; wu:cegs2778
Orthologs

Genomic context

See junba in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (51732979..51734540, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (51098615..51100170, complement)
103 previous assembly Zv9 (GCF_000002035.4) 1 NC_007112.5 (52226931..52228460, complement)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene ribonuclease H2, subunit A Neighboring gene peroxiredoxin 2 Neighboring gene si:ch211-145g9.7 Neighboring gene DAN domain family, member 5

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription factor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
heart contraction IGI
Inferred from Genetic Interaction
more info
PubMed 
heart contraction IMP
Inferred from Mutant Phenotype
more info
PubMed 
lymph vessel development IGI
Inferred from Genetic Interaction
more info
PubMed 
lymph vessel development IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of cell cycle IEA
Inferred from Electronic Annotation
more info
 
regulation of cell population proliferation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
chromatin IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription regulator complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
JunB proto-oncogene, AP-1 transcription factor subunit a; transcription factor jun-B
Names
Jun-B oncogene
jun B proto-oncogene a

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213556.3NP_998721.2  JunB proto-oncogene, AP-1 transcription factor subunit a

    See identical proteins and their annotated locations for NP_998721.2

    Status: PROVISIONAL

    Source sequence(s)
    BC053234
    UniProtKB/TrEMBL
    Q7T367
    Related
    ENSDARP00000109347.1, ENSDART00000122628.3
    Conserved Domains (2) summary
    cd14696
    Location:248307
    bZIP_Jun; Basic leucine zipper (bZIP) domain of Jun proteins and similar proteins: a DNA-binding and dimerization domain
    pfam03957
    Location:5235
    Jun; Jun-like transcription factor

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    51732979..51734540 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017353483.2XP_017208972.1  transcription factor jun-B isoform X1

    Related
    ENSDARP00000125219.1, ENSDART00000109640.4
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