U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CG1239 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 40706, updated on 5-Jan-2023

Summary

Go to the top of the page Help
Official Symbol
CG1239provided by FlyBase
Primary source
FLYBASE:FBgn0037368
Locus tag
Dmel_CG1239
See related
AllianceGenome:FB:FBgn0037368
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
BCDIN3D; cg1239; Dmel\CG1239
Summary
Predicted to enable O-methyltransferase activity; RNA methyltransferase activity; and snRNA binding activity. Predicted to be involved in snRNA modification. Is expressed in organism. Orthologous to human MEPCE (methylphosphate capping enzyme). [provided by Alliance of Genome Resources, Apr 2022]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CG1239 in Genome Data Viewer
Location:
83C1-83C1; 3-47.5 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.46 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (5733513..5734702)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (1559235..1560424)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene castor Neighboring gene long non-coding RNA:CR44924 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Symplekin

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. RNA methyltransferase BCDIN3D is crucial for female fertility and miRNA and mRNA profiles in Drosophila ovaries. Zhu L, et al. PLoS One, 2019. PMID 31145769, Free PMC Article
  2. Drosophila Symplekin localizes dynamically to the histone locus body and tricellular junctions. Tatomer DC, et al. Nucleus, 2014. PMID 25493544, Free PMC Article
  3. Genome-wide analysis of nuclear mRNA export pathways in Drosophila. Herold A, et al. EMBO J, 2003 May 15. PMID 12743041, Free PMC Article
  4. Genome-wide analysis of mRNAs regulated by the THO complex in Drosophila melanogaster. Rehwinkel J, et al. Nat Struct Mol Biol, 2004 Jun. PMID 15133499
  5. The role of Dichaete in transcriptional regulation during Drosophila embryonic development. Aleksic J, et al. BMC Genomics, 2013 Dec 8. PMID 24314314, Free PMC Article

See all (31) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables O-methyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
enables RNA methyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables snRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
Process Evidence Code Pubs
involved_in snRNA modification IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
uncharacterized protein
Names
CG1239-PA
CG1239-PB
CG1239-PC
NP_001287185.1
NP_001287186.1
NP_649577.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    5733513..5734702
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001300256.1 → NP_001287185.1  uncharacterized protein Dmel_CG1239, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001287185.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0MJ21, Q9VNH1
    UniProtKB/TrEMBL
    A0A0B4LGT7
    Related
    FBpp0310437, FBtr0343988
    Conserved Domains (2) summary
    pfam06859
    Location:191 → 299
    Bin3; Bicoid-interacting protein 3 (Bin3)
    pfam12847
    Location:109 → 233
    Methyltransf_18; Methyltransferase domain

  2. NM_001300257.1 → NP_001287186.1  uncharacterized protein Dmel_CG1239, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001287186.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0MJ21, Q9VNH1
    UniProtKB/TrEMBL
    A0A0B4LGT7
    Related
    FBpp0310438, FBtr0343989
    Conserved Domains (2) summary
    pfam06859
    Location:191 → 299
    Bin3; Bicoid-interacting protein 3 (Bin3)
    pfam12847
    Location:109 → 233
    Methyltransf_18; Methyltransferase domain

  3. NM_141320.3 → NP_649577.1  uncharacterized protein Dmel_CG1239, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_649577.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0MJ21, Q9VNH1
    UniProtKB/TrEMBL
    A0A0B4LGT7
    Related
    FBpp0078369, FBtr0078720
    Conserved Domains (2) summary
    pfam06859
    Location:191 → 299
    Bin3; Bicoid-interacting protein 3 (Bin3)
    pfam12847
    Location:109 → 233
    Methyltransf_18; Methyltransferase domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A0B4LGT7 A0A0B4LGT7
Q9VNH1.2 Q9VNH1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Chemical Information
Molecular Biology Databases
Research Materials
Tools
Miscellaneous