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fbxw11b F-box and WD repeat domain containing 11b [ Danio rerio (zebrafish) ]

Gene ID: 406825, updated on 3-Oct-2019

Summary

Official Symbol
fbxw11bprovided by ZNC
Official Full Name
F-box and WD repeat domain containing 11bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2903
See related
Ensembl:ENSDARG00000017230
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
btrc2; fbxw11a; zgc:63728; wu:fa12e12; wu:fb11f03

Genomic context

See fbxw11b in Genome Data Viewer
Location:
chromosome: 10
Exon count:
13
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (21444633..21470590)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (21487246..21513209)
103 previous assembly Zv9 (GCF_000002035.4) 10 NC_007121.5 (21525825..21551795)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103911741 Neighboring gene transient receptor potential cation channel, subfamily C, member 7a Neighboring gene eukaryotic translation termination factor 1b Neighboring gene fibroblast growth factor 18b Neighboring gene protocadherin-10 Neighboring gene protocadherin alpha-C2-like

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
sprouting angiogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
Component Evidence Code Pubs
Pwp2p-containing subcomplex of 90S preribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
small-subunit processome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
F-box and WD repeat domain containing 11b
Names
F-box and WD-40 domain protein 11b
fbxw11

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213504.2NP_998669.2  F-box and WD repeat domain containing 11b

    Status: PROVISIONAL

    Source sequence(s)
    BC056809
    UniProtKB/TrEMBL
    F6PB05, Q6PGW4
    Related
    ENSDARP00000017497.7, ENSDART00000019252.8
    Conserved Domains (5) summary
    COG2319
    Location:216510
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:229507
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:67105
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:109156
    F-box-like; F-box-like
    sd00039
    Location:232267
    7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    21444633..21470590
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005155294.4XP_005155351.1  F-box and WD repeat domain containing 11b isoform X1

    UniProtKB/TrEMBL
    E9QCK5
    Related
    ENSDARP00000117181.1, ENSDART00000140113.3
    Conserved Domains (5) summary
    COG2319
    Location:209503
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:222500
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:6098
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:102149
    F-box-like; F-box-like
    sd00039
    Location:225260
    7WD40; WD40 repeat [structural motif]

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394781.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    307452..333377
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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