tfdp1a transcription factor Dp-1, a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: tfdp1aprovided by ZNC
Official Full Name: transcription factor Dp-1, aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-2883
See related: Ensembl:ENSDARG00000019293 Vega:OTTDARG00000025889
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as: tfdp1l; zgc:55487; wu:fb94b07; wu:fc52a06

Genomic context

Location:: chromosome: 9

Exon count:: 13

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	9	NC_007120.7 (34950941..34968650)
105	previous assembly	GRCz10 (GCF_000002035.5)	9	NC_007120.6 (35141756..35159463)

Chromosome 9 - NC_007120.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Submit: New GeneRIF Correction

Variation

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Pathways from BioSystems

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Cell Cycle, organism-specific biosystem (from REACTOME)
Cell Cycle, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Cell Cycle, Mitotic, organism-specific biosystem (from REACTOME)
Cell Cycle, Mitotic, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Cell cycle, organism-specific biosystem (from KEGG)
Cell cycle, organism-specific biosystemMitotic cell cycle progression is accomplished through a reproducible sequence of events, DNA replication (S phase) and mitosis (M phase) separated temporally by gaps known as G1 and G2 phases. Cycli...
Cell cycle, conserved biosystem (from KEGG)
Cell cycle, conserved biosystemMitotic cell cycle progression is accomplished through a reproducible sequence of events, DNA replication (S phase) and mitosis (M phase) separated temporally by gaps known as G1 and G2 phases. Cycli...
Cyclin D associated events in G1, organism-specific biosystem (from REACTOME)
Cyclin D associated events in G1, organism-specific biosystemcomputationally inferred pathway (not manually curated)
E2F mediated regulation of DNA replication, organism-specific biosystem (from REACTOME)
E2F mediated regulation of DNA replication, organism-specific biosystemcomputationally inferred pathway (not manually curated)
G0 and Early G1, organism-specific biosystem (from REACTOME)
G0 and Early G1, organism-specific biosystemcomputationally inferred pathway (not manually curated)
G1 Phase, organism-specific biosystem (from REACTOME)
G1 Phase, organism-specific biosystemcomputationally inferred pathway (not manually curated)
G1/S Transition, organism-specific biosystem (from REACTOME)
G1/S Transition, organism-specific biosystemcomputationally inferred pathway (not manually curated)
G1/S-Specific Transcription, organism-specific biosystem (from REACTOME)
G1/S-Specific Transcription, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Gene Expression, organism-specific biosystem (from REACTOME)
Gene Expression, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Generic Transcription Pathway, organism-specific biosystem (from REACTOME)
Generic Transcription Pathway, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Mitotic G1-G1/S phases, organism-specific biosystem (from REACTOME)
Mitotic G1-G1/S phases, organism-specific biosystemcomputationally inferred pathway (not manually curated)
SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription, organism-specific biosystem (from REACTOME)
SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Signal Transduction, organism-specific biosystem (from REACTOME)
Signal Transduction, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Signaling by TGF-beta Receptor Complex, organism-specific biosystem (from REACTOME)
Signaling by TGF-beta Receptor Complex, organism-specific biosystemcomputationally inferred pathway (not manually curated)
TGF-beta signaling pathway, organism-specific biosystem (from KEGG)
TGF-beta signaling pathway, organism-specific biosystemThe transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines found in species r...
TGF-beta signaling pathway, conserved biosystem (from KEGG)
TGF-beta signaling pathway, conserved biosystemThe transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines found in species r...
Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer, organism-specific biosystem (from REACTOME)
Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer, organism-specific biosystemcomputationally inferred pathway (not manually curated)

General gene information

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Markers

fa96a12.x1 (e-PCR)
- UniSTS:189714

fa96a12.x1 (e-PCR)
- UniSTS:189715

Homology

Homologs of the tfdp1a gene: The tfdp1a gene is conserved in human, chimpanzee, dog, cow, mouse, rat, chicken, and frog.
The Hierarchical Catalog of Orthologs

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
DNA binding	IEA Inferred from Electronic Annotation more info
DNA-binding transcription factor activity	IEA Inferred from Electronic Annotation more info
DNA-binding transcription factor activity, RNA polymerase II-specific	IBA Inferred from Biological aspect of Ancestor more info	PubMed

Process	Evidence Code	Pubs
cell cycle	IEA Inferred from Electronic Annotation more info
regulation of transcription, DNA-templated	IEA Inferred from Electronic Annotation more info
transcription, DNA-templated	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
nucleus	IBA Inferred from Biological aspect of Ancestor more info	PubMed
nucleus	IEA Inferred from Electronic Annotation more info
transcription factor complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: RNA-binding protein MEX3A

Names: transcription factor Dp-1, like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_213492.2 → NP_998657.1 RNA-binding protein MEX3A

See identical proteins and their annotated locations for NP_998657.1

Status: VALIDATED

Source sequence(s)

CR936415

UniProtKB/TrEMBL

Q803N1

Related

ENSDARP00000072266.4, OTTDARP00000027619, ENSDART00000077800.6, OTTDART00000034234

Conserved Domains (3) summary

cd14458
Location:198 → 244

DP_DD; coiled coil [structural motif]

pfam02319
Location:115 → 193

E2F_TDP; E2F/DP family winged-helix DNA-binding domain

pfam08781
Location:200 → 339

DP; Transcription factor DP

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007120.7 Reference GRCz11 Primary Assembly

Range

34950941..34968650

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_009304816.2 → XP_009303091.1 RNA-binding protein MEX3A isoform X1

See identical proteins and their annotated locations for XP_009303091.1

UniProtKB/TrEMBL

Q803N1

Conserved Domains (3) summary

cd14458
Location:198 → 244

DP_DD; coiled coil [structural motif]

pfam02319
Location:115 → 193

E2F_TDP; E2F/DP family winged-helix DNA-binding domain

pfam08781
Location:200 → 339

DP; Transcription factor DP
XM_005167824.4 → XP_005167881.1 RNA-binding protein MEX3A isoform X1

See identical proteins and their annotated locations for XP_005167881.1

UniProtKB/TrEMBL

Q803N1

Conserved Domains (3) summary

cd14458
Location:198 → 244

DP_DD; coiled coil [structural motif]

pfam02319
Location:115 → 193

E2F_TDP; E2F/DP family winged-helix DNA-binding domain

pfam08781
Location:200 → 339

DP; Transcription factor DP