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rps11 ribosomal protein S11 [ Danio rerio (zebrafish) ]

Gene ID: 406686, updated on 14-Feb-2019

Summary

Official Symbol
rps11provided by ZNC
Official Full Name
ribosomal protein S11provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2701
See related
Ensembl:ENSDARG00000053058
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
zgc:56293; wu:fa91c09; wu:fb34b11
Orthologs

Genomic context

See rps11 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (37787275..37789235)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (37645417..37647377)
103 previous assembly Zv9 (GCF_000002035.4) 3 NC_007114.5 (37782057..37784017)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene si:dkey-260c8.8 Neighboring gene apoptosis regulator BAX-like Neighboring gene BCL2 associated X, apoptosis regulator a Neighboring gene acid-sensing (proton-gated) ion channel 2 Neighboring gene uncharacterized LOC101885398

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ribosome IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213377.1NP_998542.1  40S ribosomal protein S11

    See identical proteins and their annotated locations for NP_998542.1

    Status: PROVISIONAL

    Source sequence(s)
    BC046054
    UniProtKB/TrEMBL
    Q7ZV05
    Related
    ENSDARP00000069513.5, ENSDART00000075028.6
    Conserved Domains (3) summary
    PTZ00241
    Location:1159
    PTZ00241; 40S ribosomal protein S11; Provisional
    pfam00366
    Location:76145
    Ribosomal_S17; Ribosomal protein S17
    pfam16205
    Location:574
    Ribosomal_S17_N; Ribosomal_S17 N-terminal

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    37787275..37789235
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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