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rsrc2 arginine/serine-rich coiled-coil 2 [ Danio rerio (zebrafish) ]

Gene ID: 406566, updated on 27-Mar-2024

Summary

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Official Symbol
rsrc2provided by ZNC
Official Full Name
arginine/serine-rich coiled-coil 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2457
See related
Ensembl:ENSDARG00000042534 AllianceGenome:ZFIN:ZDB-GENE-040426-2457
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:85695; tdsubc_1d5; wu:fc56g08; ik:tdsubc_1d5; xx:tdsubc_1d5; si:ch211-110p13.2
Summary
Orthologous to human RSRC2 (arginine and serine rich coiled-coil 2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (67275897..67292708, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (66597526..66614313, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene si:ch211-110p13.9 Neighboring gene zinc finger, CCHC domain containing 8 Neighboring gene uncharacterized LOC101885639 Neighboring gene MLX interacting protein Neighboring gene uracil DNA glycosylase a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
arginine/serine-rich coiled-coil protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213280.1 → NP_998445.1  arginine/serine-rich coiled-coil protein 2

    See identical proteins and their annotated locations for NP_998445.1

    Status: PROVISIONAL

    Source sequence(s)
    BC067581
    UniProtKB/Swiss-Prot
    Q6NWI1
    Related
    ENSDARP00000062365.5, ENSDART00000062366.7
    Conserved Domains (1) summary
    pfam15477
    Location:324 → 394
    SMAP; Small acidic protein family

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    67275897..67292708 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005165621.4 → XP_005165678.1  arginine/serine-rich coiled-coil protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BD43
    Conserved Domains (1) summary
    pfam15477
    Location:328 → 398
    SMAP; Small acidic protein family

  2. XM_005165626.4 → XP_005165683.1  arginine/serine-rich coiled-coil protein 2 isoform X2

    See identical proteins and their annotated locations for XP_005165683.1

    UniProtKB/TrEMBL
    A0A8M2BCX0
    Conserved Domains (1) summary
    pfam15477
    Location:131 → 201
    SMAP; Small acidic protein family

  3. XM_005165625.4 → XP_005165682.1  arginine/serine-rich coiled-coil protein 2 isoform X2

    See identical proteins and their annotated locations for XP_005165682.1

    UniProtKB/TrEMBL
    A0A8M2BCX0
    Conserved Domains (1) summary
    pfam15477
    Location:131 → 201
    SMAP; Small acidic protein family
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6NWI1.1 GenPept UniProtKB/Swiss-Prot:Q6NWI1

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