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rps2 ribosomal protein S2 [ Danio rerio (zebrafish) ]

Gene ID: 406565, updated on 24-Apr-2022

Summary

Official Symbol
rps2provided by ZNC
Official Full Name
ribosomal protein S2provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2454
See related
Ensembl:ENSDARG00000077291 AllianceGenome:ZFIN:ZDB-GENE-040426-2454
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
rps2e; fc94f01; zgc:85824; tdsubc_2h2; wu:fb10e01; wu:fc94f01; wu:fj09b04; ik:tdsubc_2h2; xx:tdsubc_2h2
Summary
Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Is expressed in epidermis; mesenchyme; nervous system; pectoral fin; and pharyngeal arch 3-7 skeleton. Orthologous to human RPS2 (ribosomal protein S2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See rps2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (18398842..18403177)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (18249131..18253437)
103 previous assembly Zv9 (GCF_000002035.4) 3 NC_007114.5 (18127806..18132118)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene KDEL endoplasmic reticulum protein retention receptor 2a Neighboring gene si:ch211-139g16.8 Neighboring gene NADH:ubiquinone oxidoreductase subunit B10 Neighboring gene alpha glucosidase

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in translation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 
part_of small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
40S ribosomal protein S2
Names
ribosomal protein S2e

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213279.2NP_998444.1  40S ribosomal protein S2

    See identical proteins and their annotated locations for NP_998444.1

    Status: PROVISIONAL

    Source sequence(s)
    BC067645
    UniProtKB/TrEMBL
    Q6NWC3
    Related
    ENSDARP00000101605.1, ENSDART00000110842.3
    Conserved Domains (1) summary
    PTZ00070
    Location:40264
    PTZ00070; 40S ribosomal protein S2; Provisional

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    18398842..18403177
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005163871.4XP_005163928.1  40S ribosomal protein S2 isoform X1

    See identical proteins and their annotated locations for XP_005163928.1

    UniProtKB/TrEMBL
    Q6NWC3
    Related
    ENSDARP00000117673.1, ENSDART00000138107.3
    Conserved Domains (1) summary
    PTZ00070
    Location:40264
    PTZ00070; 40S ribosomal protein S2; Provisional