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col9a1b collagen, type IX, alpha 1b [ Danio rerio (zebrafish) ]

Gene ID: 406548, updated on 26-Nov-2016
Official Symbol
col9a1bprovided by ZNC
Official Full Name
collagen, type IX, alpha 1bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2410
See related
Ensembl:ENSDARG00000031483 Vega:OTTDARG00000022869
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
cb339; col9a1; sb:cb339; zgc:85892; wu:fa12a12; wu:fa12d02; wu:fc22c08; wu:fc38d08
Location:
chromosome: 13
Exon count:
32
Annotation release Status Assembly Chr Location
105 current GRCz10 (GCF_000002035.5) 13 NC_007124.6 (38993574..39033917, complement)
103 previous assembly Zv9 (GCF_000002035.4) 13 NC_007124.5 (39679448..39732503, complement)

Chromosome 13 - NC_007124.6Genomic Context describing neighboring genes Neighboring gene LMBR1 domain containing 1 Neighboring gene zgc:153049 Neighboring gene collagen alpha-1(IX) chain-like Neighboring gene family with sequence similarity 135, member A

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
collagen trimer IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
collagen type IX alpha I
Names
collagen, type IX, alpha 1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213264.2NP_998429.2  collagen type IX alpha I precursor

    Status: VALIDATED

    Source sequence(s)
    BC068419, BX322620, CD777796
    UniProtKB/TrEMBL
    B8A4T6, Q6NUV1
    Related
    ENSDARP00000121882, OTTDARP00000024200, ENSDART00000131508, OTTDART00000029652
    Conserved Domains (1) summary
    pfam01391
    Location:237294
    Collagen; Collagen triple helix repeat (20 copies)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz10 Primary Assembly

Genomic

  1. NC_007124.6 Reference GRCz10 Primary Assembly

    Range
    38993574..39033917 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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