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rad51 RAD51 recombinase [ Danio rerio (zebrafish) ]

Gene ID: 406487, updated on 14-Feb-2019

Summary

Official Symbol
rad51provided by ZNC
Official Full Name
RAD51 recombinaseprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2286
See related
Ensembl:ENSDARG00000041411
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
zgc:77754; wu:fb38e12
Orthologs

Genomic context

See rad51 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
10
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (46428020..46442006)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (46524300..46538286)
103 previous assembly Zv9 (GCF_000002035.4) 20 NC_007131.5 (46679017..46693003)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene BCL2 modifying factor 2 Neighboring gene adhesion G protein-coupled receptor G11 Neighboring gene regulator of microtubule dynamics 3 Neighboring gene uncharacterized LOC110438198

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-dependent ATPase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
DNA-dependent ATPase activity IEA
Inferred from Electronic Annotation
more info
 
double-stranded DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
recombinase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
recombinase activity IEA
Inferred from Electronic Annotation
more info
 
single-stranded DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
DNA metabolic process IEA
Inferred from Electronic Annotation
more info
 
DNA recombinase assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
DNA recombination IEA
Inferred from Electronic Annotation
more info
 
DNA repair IEA
Inferred from Electronic Annotation
more info
 
cellular response to DNA damage stimulus IEA
Inferred from Electronic Annotation
more info
 
chromosome organization involved in meiotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 
double-strand break repair via homologous recombination IMP
Inferred from Mutant Phenotype
more info
PubMed 
hematopoietic stem cell proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
mitotic recombination IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitotic recombination-dependent replication fork processing IEA
Inferred from Electronic Annotation
more info
 
reciprocal meiotic recombination IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
response to cadmium ion IEP
Inferred from Expression Pattern
more info
PubMed 
response to methylmercury IDA
Inferred from Direct Assay
more info
PubMed 
strand invasion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
condensed nuclear chromosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
DNA repair protein RAD51 homolog 1
Names
RAD51 homolog (RecA homolog, E. coli)

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213206.2NP_998371.2  DNA repair protein RAD51 homolog 1

    Status: VALIDATED

    Source sequence(s)
    BX936455
    UniProtKB/TrEMBL
    Q5TYR1
    Related
    ENSDARP00000060705.3, ENSDART00000060706.5
    Conserved Domains (3) summary
    cd01123
    Location:103336
    Rad51_DMC1_radA; Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a ...
    TIGR02239
    Location:26340
    recomb_RAD51; DNA repair protein RAD51
    pfam14520
    Location:3281
    HHH_5; Helix-hairpin-helix domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    46428020..46442006
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395077.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    173233..190287
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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