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ankra2 ankyrin repeat, family A (RFXANK-like), 2 [ Danio rerio (zebrafish) ]

Gene ID: 406403, updated on 21-Dec-2022

Summary

Official Symbol
ankra2provided by ZNC
Official Full Name
ankyrin repeat, family A (RFXANK-like), 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2141
See related
Ensembl:ENSDARG00000035399 AllianceGenome:ZFIN:ZDB-GENE-040426-2141
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:64138; wu:fd08c02
Summary
Predicted to be involved in regulation of gene expression. Predicted to be active in nucleus. Orthologous to human ANKRA2 (ankyrin repeat family A member 2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See ankra2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (34981565..34987273)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (34381412..34387120)
103 previous assembly Zv9 (GCF_000002035.4) 5 NC_007116.5 (36599464..36605171)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene ectodermal-neural cortex 1 Neighboring gene Rho guanine nucleotide exchange factor (GEF) 28a Neighboring gene forkhead box D1 Neighboring gene basic transcription factor 3

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in regulation of gene expression IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
ankyrin repeat family A protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213129.2NP_998294.1  ankyrin repeat family A protein 2

    See identical proteins and their annotated locations for NP_998294.1

    Status: PROVISIONAL

    Source sequence(s)
    BC053275
    UniProtKB/TrEMBL
    A7MCR3, Q7T331
    Related
    ENSDARP00000134742.2, ENSDART00000160504.2
    Conserved Domains (4) summary
    cd00204
    Location:159283
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:169260
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:136185
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:164195
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    34981565..34987273
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005171827.2XP_005171884.1  ankyrin repeat family A protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BJM0, A2BGZ3
    Related
    ENSDARP00000123268.1, ENSDART00000134795.3
    Conserved Domains (4) summary
    cd00204
    Location:164288
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:174265
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:141190
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:169200
    ANK; ANK repeat [structural motif]

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394590.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    293732..298687
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)