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pla2g6 phospholipase A2, group VI (cytosolic, calcium-independent) [ Danio rerio (zebrafish) ]

Gene ID: 406370, updated on 2-Mar-2019

Summary

Official Symbol
pla2g6provided by ZNC
Official Full Name
phospholipase A2, group VI (cytosolic, calcium-independent)provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2079
See related
Ensembl:ENSDARG00000060921
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
zgc:77476; wu:fc06g09
Orthologs

Genomic context

See pla2g6 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
19
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (29087372..29126878)
105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (29138202..29177683)
103 previous assembly Zv9 (GCF_000002035.4) 22 NC_007133.5 (31659122..31698605)

Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene Pim proto-oncogene, serine/threonine kinase, related 100 Neighboring gene chromobox homolog 6a Neighboring gene BAI1-associated protein 2-like 2b Neighboring gene parvalbumin 7 Neighboring gene neutrophil cytosolic factor 4

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
lipid catabolic process IEA
Inferred from Electronic Annotation
more info
 
lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
85/88 kDa calcium-independent phospholipase A2
NP_998262.1
XP_005161851.1
XP_021324984.1
XP_021324985.1
XP_021324986.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213097.2NP_998262.1  85/88 kDa calcium-independent phospholipase A2

    See identical proteins and their annotated locations for NP_998262.1

    Status: PROVISIONAL

    Source sequence(s)
    BC067375
    UniProtKB/TrEMBL
    Q6NWY0
    Related
    ENSDARP00000044558.4, ENSDART00000044559.6
    Conserved Domains (5) summary
    cd07212
    Location:467805
    Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
    cd00204
    Location:145271
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:155247
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:120171
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:151182
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    29087372..29126878
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005161794.3XP_005161851.1  85/88 kDa calcium-independent phospholipase A2 isoform X2

    UniProtKB/TrEMBL
    F1QXU0
    Related
    ENSDARP00000155190.1, ENSDART00000186776.1
    Conserved Domains (5) summary
    cd07212
    Location:467805
    Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
    cd00204
    Location:145271
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:155247
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:120171
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:151182
    ANK; ANK repeat [structural motif]
  2. XM_021469309.1XP_021324984.1  85/88 kDa calcium-independent phospholipase A2 isoform X1

    Related
    ENSDARP00000125120.1, ENSDART00000150489.3
    Conserved Domains (3) summary
    cd07212
    Location:473811
    Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
    cd00204
    Location:151277
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:157188
    ANK; ANK repeat [structural motif]
  3. XM_021469311.1XP_021324986.1  85/88 kDa calcium-independent phospholipase A2 isoform X4

    Conserved Domains (3) summary
    cd07212
    Location:434772
    Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
    cd00204
    Location:151277
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:157188
    ANK; ANK repeat [structural motif]
  4. XM_021469310.1XP_021324985.1  85/88 kDa calcium-independent phospholipase A2 isoform X3

    Conserved Domains (3) summary
    cd07212
    Location:473786
    Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
    cd00204
    Location:151277
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:157188
    ANK; ANK repeat [structural motif]

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395117.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    53464..98846
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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