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rps6kb1b ribosomal protein S6 kinase b, polypeptide 1b [ Danio rerio (zebrafish) ]

Gene ID: 406349, updated on 14-Feb-2019

Summary

Official Symbol
rps6kb1bprovided by ZNC
Official Full Name
ribosomal protein S6 kinase b, polypeptide 1bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2038
See related
Ensembl:ENSDARG00000058230
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
S6K1; fc51h01; rps6kb1; zgc:55713; wu:fc51h01
Orthologs

Genomic context

See rps6kb1b in Genome Data Viewer
Location:
chromosome: 15
Exon count:
15
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (17407002..17424270)
105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (17470980..17488248)
103 previous assembly Zv9 (GCF_000002035.4) 15 NC_007126.5 (16425954..16443890)

Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110437900 Neighboring gene tubulin, delta 1 Neighboring gene sorting nexin 19b Neighboring gene A disintegrin and metalloproteinase with thrombospondin motifs 15-like

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
kinase activity IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
protein kinase activity IEA
Inferred from Electronic Annotation
more info
 
protein serine/threonine kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 
ribosomal protein S6 kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
intracellular signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
phosphorylation IEA
Inferred from Electronic Annotation
more info
 
positive regulation of translational initiation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein phosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 
signal transduction IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ribosome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
ribosomal protein S6 kinase beta-1
Names
ribosomal protein S6 kinase 1
ribosomal protein S6 kinase b, polypeptide 1
ribosomal protein S6 kinase, polypeptide 1
NP_998241.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213076.1NP_998241.1  ribosomal protein S6 kinase beta-1

    See identical proteins and their annotated locations for NP_998241.1

    Status: PROVISIONAL

    Source sequence(s)
    BC046888
    UniProtKB/TrEMBL
    Q802Y7
    Related
    ENSDARP00000075502.4, ENSDART00000081059.5
    Conserved Domains (2) summary
    smart00220
    Location:65326
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd05584
    Location:68390
    STKc_p70S6K; Catalytic domain of the Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007126.7 Reference GRCz11 Primary Assembly

    Range
    17407002..17424270
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394944.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    13201..30469
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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