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rbm4.3 RNA binding motif protein 4.3 [ Danio rerio (zebrafish) ]

Gene ID: 406277, updated on 8-Dec-2022

Summary

Official Symbol
rbm4.3provided by ZNC
Official Full Name
RNA binding motif protein 4.3provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1938
See related
Ensembl:ENSDARG00000022129 AllianceGenome:ZFIN:ZDB-GENE-040426-1938
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb55c03; fb78a04; fj36h04; zgc:56141; zgc:77000; wu:fb55c03; wu:fb78a04; wu:fj36h04
Summary
Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be active in nuclear speck. Orthologous to human RBM4 (RNA binding motif protein 4). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See rbm4.3 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (22792090..22795637)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (22520933..22524480)
103 previous assembly Zv9 (GCF_000002035.4) 7 NC_007118.5 (23959190..23962728)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene TRAF interacting protein with forkhead associated domain Neighboring gene RNA binding motif protein 4.2 Neighboring gene RNA binding motif protein 4.1

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in nuclear speck IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
RNA-binding protein 4.3; uncharacterized protein LOC406277

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213317.3NP_998482.1  RNA-binding protein 4.3

    See identical proteins and their annotated locations for NP_998482.1

    Status: VALIDATED

    Source sequence(s)
    AL928799
    UniProtKB/TrEMBL
    A0A8M1PJ67, Q6NXC1
    Related
    ENSDARP00000117497.1, ENSDART00000135207.3
    Conserved Domains (1) summary
    cl17169
    Location:268
    RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    22792090..22795637
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005172266.4XP_005172323.1  uncharacterized protein LOC406277 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BJM8
    Conserved Domains (1) summary
    cl17169
    Location:2389
    RRM_SF; RNA recognition motif (RRM) superfamily

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_213004.1: Suppressed sequence

    Description
    NM_213004.1: This RefSeq was permanently suppressed because there is insufficient support for the transcript and the protein.