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per1b period circadian clock 1b [ Danio rerio (zebrafish) ]

Gene ID: 406204, updated on 26-Oct-2019

Summary

Official Symbol
per1bprovided by ZNC
Official Full Name
period circadian clock 1bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040419-1
See related
Ensembl:ENSDARG00000012499
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
per4; zfper4
Annotation information
Annotation category: partial on reference assembly

Genomic context

See per1b in Genome Data Viewer
Location:
chromosome: 7
Exon count:
19
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (50822465..50846291)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (50547395..50571221)
103 previous assembly Zv9 (GCF_000002035.4) 7 NC_007118.5 (52277645..52301471)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene cocaine- and amphetamine-regulated transcript-like Neighboring gene death domain containing 1 Neighboring gene procollagen C-endopeptidase enhancer b Neighboring gene si:dkey-37f13.4

Genomic regions, transcripts, and products

Bibliography

Pathways from BioSystems

  • Exercise-induced Circadian Regulation, organism-specific biosystem (from WikiPathways)
    Exercise-induced Circadian Regulation, organism-specific biosystem
    Exercise-induced Circadian Regulation
  • Herpes simplex infection, organism-specific biosystem (from KEGG)
    Herpes simplex infection, organism-specific biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
  • Herpes simplex infection, conserved biosystem (from KEGG)
    Herpes simplex infection, conserved biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
transcription corepressor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription factor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
circadian regulation of gene expression IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
dopaminergic neuron differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
entrainment of circadian clock by photoperiod IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
negative regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive regulation of dopaminergic neuron differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of circadian rhythm IMP
Inferred from Mutant Phenotype
more info
PubMed 
response to light stimulus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
response to light stimulus IDA
Inferred from Direct Assay
more info
PubMed 
response to light stimulus IEP
Inferred from Expression Pattern
more info
PubMed 
response to temperature stimulus IDA
Inferred from Direct Assay
more info
PubMed 
retina development in camera-type eye IMP
Inferred from Mutant Phenotype
more info
PubMed 
visual perception IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
period circadian protein homolog 1
Names
period homolog 1b
period homolog 4

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_212439.2NP_997604.2  period circadian protein homolog 1

    See identical proteins and their annotated locations for NP_997604.2

    Status: PROVISIONAL

    Source sequence(s)
    AY597250
    UniProtKB/TrEMBL
    Q6E2N4
    Related
    ENSDARP00000007258.6, ENSDART00000011082.7
    Conserved Domains (3) summary
    cd00130
    Location:400491
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam08447
    Location:403487
    PAS_3; PAS fold
    pfam12114
    Location:11931326
    Period_C; Period protein 2/3C-terminal region

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    50822465..50846291
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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