Format

Send to:

Choose Destination

Per period circadian protein [ Apis mellifera (honey bee) ]

Gene ID: 406112, updated on 8-Jan-2019

Summary

Gene symbol
Per
Gene description
period circadian protein
See related
BEEBASE:GB52077
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Apis mellifera
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita; Aculeata; Apoidea; Apidae; Apis
Also known as
GB19264

Genomic context

See Per in Genome Data Viewer
Location:
chromosome: LG12
Exon count:
17
Annotation release Status Assembly LG Location
104 current Amel_HAv3.1 (GCF_003254395.2) LG12 NC_037649.1 (10032689..10051762, complement)
103 previous assembly Amel_4.5 (GCF_000002195.4) LG12 NC_007081.3 (10499157..10518022)

Linkage Group LG12 - NC_037649.1Genomic Context describing neighboring genes Neighboring gene proteasome subunit beta type-6 Neighboring gene sodium-coupled monocarboxylate transporter 1 Neighboring gene RNA-binding protein 45 Neighboring gene 6-phosphogluconate dehydrogenase, decarboxylating

Genomic regions, transcripts, and products

Bibliography

Pathways from BioSystems

  • Circadian rhythm - fly, organism-specific biosystem (from KEGG)
    Circadian rhythm - fly, organism-specific biosystemCircadian rhythm is an internal biological clock, which enables to sustain an approximately 24-hour rhythm in the absence of environmental cues. In the fruit fly Drosophila melanogaster, seven genes ...

General protein information

Preferred Names
period circadian protein
Names
period clock protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001011596.1NP_001011596.1  period circadian protein

    See identical proteins and their annotated locations for NP_001011596.1

    Status: PROVISIONAL

    Source sequence(s)
    AF159569
    UniProtKB/TrEMBL
    Q9NDF3
    Conserved Domains (4) summary
    smart00091
    Location:157218
    PAS; PAS domain
    cd00130
    Location:307411
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam12114
    Location:9271097
    Period_C; Period protein 2/3C-terminal region
    pfam14598
    Location:308412
    PAS_11; PAS domain

RefSeqs of Annotated Genomes: Apis mellifera Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Amel_HAv3.1 Primary Assembly

Genomic

  1. NC_037649.1 Reference Amel_HAv3.1 Primary Assembly

    Range
    10032689..10051762 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026444134.1XP_026299919.1  period circadian protein isoform X5

    Conserved Domains (3) summary
    cd00130
    Location:302406
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00989
    Location:152225
    PAS; PAS fold
    pfam12114
    Location:9511054
    Period_C; Period protein 2/3C-terminal region
  2. XM_026444131.1XP_026299916.1  period circadian protein isoform X2

    Conserved Domains (3) summary
    cd00130
    Location:302406
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00989
    Location:152225
    PAS; PAS fold
    pfam12114
    Location:9591062
    Period_C; Period protein 2/3C-terminal region
  3. XM_026444133.1XP_026299918.1  period circadian protein isoform X4

    Conserved Domains (3) summary
    cd00130
    Location:307411
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00989
    Location:157230
    PAS; PAS fold
    pfam12114
    Location:9561059
    Period_C; Period protein 2/3C-terminal region
  4. XM_026444132.1XP_026299917.1  period circadian protein isoform X3

    Conserved Domains (3) summary
    cd00130
    Location:308412
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00989
    Location:158231
    PAS; PAS fold
    pfam12114
    Location:9571060
    Period_C; Period protein 2/3C-terminal region
  5. XM_026444130.1XP_026299915.1  period circadian protein isoform X1

    Conserved Domains (3) summary
    cd00130
    Location:308412
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00989
    Location:158231
    PAS; PAS fold
    pfam12114
    Location:9651068
    Period_C; Period protein 2/3C-terminal region
  6. XM_026444136.1XP_026299921.1  period circadian protein isoform X7

    Conserved Domains (3) summary
    cd00130
    Location:138242
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00989
    Location:261
    PAS; PAS fold
    pfam12114
    Location:795898
    Period_C; Period protein 2/3C-terminal region
  7. XM_026444135.1XP_026299920.1  period circadian protein isoform X6

    Conserved Domains (3) summary
    cd00130
    Location:171275
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00989
    Location:3594
    PAS; PAS fold
    pfam12114
    Location:828931
    Period_C; Period protein 2/3C-terminal region
Support Center