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fbxl15 F-box and leucine-rich repeat protein 15 [ Danio rerio (zebrafish) ]

Gene ID: 405878, updated on 3-Oct-2019

Summary

Official Symbol
fbxl15provided by ZNC
Official Full Name
F-box and leucine-rich repeat protein 15provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2440
See related
Ensembl:ENSDARG00000005284
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
zgc:85882
Orthologs

Genomic context

See fbxl15 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (45661810..45668967, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (45500292..45507449, complement)
103 previous assembly Zv9 (GCF_000002035.4) 12 NC_007123.5 (46614278..46621435, complement)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene PH and SEC7 domain-containing protein 1-like Neighboring gene uncharacterized LOC103911953 Neighboring gene uncharacterized LOC103911954 Neighboring gene glutathione peroxidase 9

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Homology

Clone Names

  • MGC85882

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
contributes_to ubiquitin-protein transferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
contributes_to ubiquitin-protein transferase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
Process Evidence Code Pubs
G2/M transition of mitotic cell cycle ISS
Inferred from Sequence or Structural Similarity
more info
 
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
 
bone mineralization ISS
Inferred from Sequence or Structural Similarity
more info
 
dorsal/ventral pattern formation IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of BMP signaling pathway ISS
Inferred from Sequence or Structural Similarity
more info
 
protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 
protein ubiquitination ISS
Inferred from Sequence or Structural Similarity
more info
 
ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
SCF ubiquitin ligase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
SCF ubiquitin ligase complex ISS
Inferred from Sequence or Structural Similarity
more info
 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
F-box/LRR-repeat protein 15

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_212942.1NP_998107.1  F-box/LRR-repeat protein 15

    See identical proteins and their annotated locations for NP_998107.1

    Status: PROVISIONAL

    Source sequence(s)
    BC067674
    UniProtKB/Swiss-Prot
    Q6NW95
    Related
    ENSDARP00000112101.1, ENSDART00000124455.3
    Conserved Domains (3) summary
    cd09293
    Location:111272
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:5185
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam00646
    Location:1652
    F-box; F-box domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    45661810..45668967 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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