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ifng1 interferon gamma 1 [ Danio rerio (zebrafish) ]

Gene ID: 405790, updated on 11-Nov-2018

Summary

Official Symbol
ifng1provided by ZNC
Official Full Name
interferon gamma 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-040629-1
See related
Ensembl:ENSDARG00000024211 Vega:OTTDARG00000007810
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
ifng; INF-G; ifng1-2

Genomic context

See ifng1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (13507584..13509946, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (13508735..13511097, complement)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2 Neighboring gene si:ch211-266a5.12 Neighboring gene interferon gamma related Neighboring gene interleukin 26

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Cytokine-cytokine receptor interaction, organism-specific biosystem (from KEGG)
    Cytokine-cytokine receptor interaction, organism-specific biosystemCytokines are soluble extracellular proteins or glycoproteins that are crucial intercellular regulators and mobilizers of cells engaged in innate as well as adaptive inflammatory host defenses, cell ...
  • Cytokine-cytokine receptor interaction, conserved biosystem (from KEGG)
    Cytokine-cytokine receptor interaction, conserved biosystemCytokines are soluble extracellular proteins or glycoproteins that are crucial intercellular regulators and mobilizers of cells engaged in innate as well as adaptive inflammatory host defenses, cell ...
  • Herpes simplex infection, organism-specific biosystem (from KEGG)
    Herpes simplex infection, organism-specific biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
  • Herpes simplex infection, conserved biosystem (from KEGG)
    Herpes simplex infection, conserved biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
  • Proteasome, organism-specific biosystem (from KEGG)
    Proteasome, organism-specific biosystemThe proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processin...
  • Proteasome, conserved biosystem (from KEGG)
    Proteasome, conserved biosystemThe proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processin...
  • Salmonella infection, organism-specific biosystem (from KEGG)
    Salmonella infection, organism-specific biosystemSalmonella infection usually presents as a self-limiting gastroenteritis or the more severe typhoid fever and bacteremia. The common disease-causing Salmonella species in human is a single species, S...
  • Salmonella infection, conserved biosystem (from KEGG)
    Salmonella infection, conserved biosystemSalmonella infection usually presents as a self-limiting gastroenteritis or the more severe typhoid fever and bacteremia. The common disease-causing Salmonella species in human is a single species, S...
  • TGF-beta signaling pathway, organism-specific biosystem (from KEGG)
    TGF-beta signaling pathway, organism-specific biosystemThe transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines found in species r...
  • TGF-beta signaling pathway, conserved biosystem (from KEGG)
    TGF-beta signaling pathway, conserved biosystemThe transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines found in species r...

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
interferon-gamma receptor binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
defense response to bacterium IDA
Inferred from Direct Assay
more info
PubMed 
defense response to bacterium IGI
Inferred from Genetic Interaction
more info
PubMed 
defense response to bacterium IMP
Inferred from Mutant Phenotype
more info
PubMed 
endothelial to hematopoietic transition IMP
Inferred from Mutant Phenotype
more info
PubMed 
hemopoiesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
immune response IDA
Inferred from Direct Assay
more info
PubMed 
immune response IEA
Inferred from Electronic Annotation
more info
 
response to virus IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
interferon gamma 1
Names
Ifng2
Ifngamma2
interferon, gamma 1-2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_212864.1NP_998029.1  interferon gamma 1 precursor

    Status: PROVISIONAL

    Source sequence(s)
    AB158361
    UniProtKB/TrEMBL
    Q75S22
    Related
    ENSDARP00000122851.1, OTTDARP00000007656, ENSDART00000134720.2, OTTDART00000008871
    Conserved Domains (1) summary
    pfam00714
    Location:31171
    IFN-gamma; Interferon gamma

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    13507584..13509946 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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