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gjb8 gap junction protein beta 8 [ Danio rerio (zebrafish) ]

Gene ID: 404725, updated on 6-May-2021

Summary

Official Symbol
gjb8provided by ZNC
Official Full Name
gap junction protein beta 8provided by ZNC
Primary source
ZFIN:ZDB-GENE-040406-1
See related
Ensembl:ENSDARG00000042707
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
cx30.3; cx33.8; zgc:110651
Orthologs
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Genomic context

See gjb8 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (21401194..21405059)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (21590325..21594190)
103 previous assembly Zv9 (GCF_000002035.4) 9 NC_007120.5 (22434539..22438404)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene intraflagellar transport 88 homolog Neighboring gene crystallin, lambda 1 Neighboring gene gap junction protein, alpha 3 Neighboring gene zinc finger, MYM-type 2

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables gap junction channel activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables gap junction channel activity IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cell communication IEA
Inferred from Electronic Annotation
more info
 
involved_in cell-cell signaling IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within inner ear development IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in cell junction IEA
Inferred from Electronic Annotation
more info
 
part_of connexin complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of connexin complex IEA
Inferred from Electronic Annotation
more info
 
located_in gap junction IEA
Inferred from Electronic Annotation
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
gap junction protein beta 8
Names
connexin 30.3
connexin 33.8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_212825.2NP_997990.2  gap junction protein beta 8

    See identical proteins and their annotated locations for NP_997990.2

    Status: PROVISIONAL

    Source sequence(s)
    BC095350
    UniProtKB/TrEMBL
    Q503F4
    Related
    ENSDARP00000062668.5, ENSDART00000062669.6
    Conserved Domains (3) summary
    smart00037
    Location:4375
    CNX; Connexin homologues
    smart01089
    Location:148215
    Connexin_CCC; Gap junction channel protein cysteine-rich domain
    pfam00029
    Location:2217
    Connexin; Connexin

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    21401194..21405059
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394749.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    266886..270751
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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