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LINC01194 long intergenic non-protein coding RNA 1194 [ Homo sapiens (human) ]

Gene ID: 404663, updated on 10-Oct-2023

Summary

Official Symbol
LINC01194provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1194provided by HGNC
Primary source
HGNC:HGNC:37171
See related
MIM:617097; AllianceGenome:HGNC:37171
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TAG; CT49
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01194 in Genome Data Viewer
Location:
5p15.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (12574857..12805183)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (12511764..12742050)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (12574969..12805295)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:12320809-12321309 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:12321906-12322765 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:12322922-12323820 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:12323821-12324717 Neighboring gene RNA, U6 small nuclear 679, pseudogene Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:12330269-12331254 Neighboring gene uncharacterized LOC105374656 Neighboring gene uncharacterized LOC105374655 Neighboring gene Sharpr-MPRA regulatory region 1944 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:12666655-12667193 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:12667194-12667731 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:12667732-12668270 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:12668271-12668809 Neighboring gene uncharacterized LOC124900941 Neighboring gene EZH inhibitory protein pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:12805009-12805510 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:12805511-12806010 Neighboring gene uncharacterized LOC105374657 Neighboring gene NANOG hESC enhancer GRCh37_chr5:12856113-12856758 Neighboring gene long intergenic non-protein coding RNA 2220

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Other Names

  • cancer/testis antigen 49 (non-protein coding)
  • tumor antigen

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033383.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC106771, AC106790, AC106794

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    12574857..12805183
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    12511764..12742050
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)