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LINC01194 long intergenic non-protein coding RNA 1194 [ Homo sapiens (human) ]

Gene ID: 404663, updated on 17-Jun-2019

Summary

Official Symbol
LINC01194provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1194provided by HGNC
Primary source
HGNC:HGNC:37171
See related
MIM:617097
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TAG; CT49
Expression
Low expression observed in reference dataset See more

Genomic context

See LINC01194 in Genome Data Viewer
Location:
5p15.2
Exon count:
4
Annotation release Status Assembly Chr Location
109.20190607 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (12574857..12805183)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (12798873..12805295)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 679, pseudogene Neighboring gene uncharacterized LOC105374656 Neighboring gene uncharacterized LOC105374655 Neighboring gene uncharacterized LOC105374657 Neighboring gene EZH inhibitory protein pseudogene Neighboring gene long intergenic non-protein coding RNA 2220 Neighboring gene uncharacterized LOC105374659

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Other Names

  • cancer/testis antigen 49 (non-protein coding)
  • tumor antigen

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033383.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC106771, AC106790, AC106794

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    12574857..12805183
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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