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SEC16B SEC16 homolog B, endoplasmic reticulum export factor [ Bos taurus (domestic cattle) ]

Gene ID: 404548, updated on 17-Aug-2024

Summary

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Official Symbol
SEC16Bprovided by VGNC
Official Full Name
SEC16 homolog B, endoplasmic reticulum export factorprovided by VGNC
Primary source
VGNC:VGNC:34407
See related
BGD:BT25080; Ensembl:ENSBTAG00000000854
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
Rgpr; LZTR2
Orthologs
human mouse all
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Genomic context

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See SEC16B in Genome Data Viewer
Location:
chromosome: 16
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 16 NC_037343.1 (59319507..59384914, complement)

Chromosome 16 - NC_037343.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104974480 Neighboring gene glutaredoxin-1-like Neighboring gene quinone oxidoreductase-like protein 2 Neighboring gene RAS protein activator like 2 Neighboring gene microRNA mir-2285x

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037343.1 Chromosome 16 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in COPII vesicle coating IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to endoplasmic reticulum exit site IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ER to Golgi transport vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum exit site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein transport protein Sec16B
Names
RGPR-p117
leucine zipper transcription regulator 2
protein SEC16 homolog B
regucalcin gene promoter region-related protein p117
regucalcin gene promotor region related protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_206971.2 → NP_996854.2  protein transport protein Sec16B

    See identical proteins and their annotated locations for NP_996854.2

    Status: PROVISIONAL

    Source sequence(s)
    AB168116
    UniProtKB/Swiss-Prot
    Q75NY9
    UniProtKB/TrEMBL
    A0A3Q1M6M1
    Related
    ENSBTAP00000001137.7, ENSBTAT00000001137.7
    Conserved Domains (1) summary
    cd09233
    Location:327 → 683
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037343.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    59319507..59384914 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015475127.3 → XP_015330613.2  protein transport protein Sec16B isoform X3

    UniProtKB/TrEMBL
    A0A3Q1M6M1
    Conserved Domains (1) summary
    cd09233
    Location:229 → 585
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

  2. XM_015475126.3 → XP_015330612.2  protein transport protein Sec16B isoform X2

    UniProtKB/TrEMBL
    A0A3Q1M6M1
    Conserved Domains (1) summary
    cd09233
    Location:327 → 683
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

  3. XM_015475123.3 → XP_015330609.2  protein transport protein Sec16B isoform X1

    UniProtKB/TrEMBL
    A0A3Q1M6M1, F1MTY4
    Conserved Domains (1) summary
    cd09233
    Location:327 → 683
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

  4. XM_024976062.2 → XP_024831830.1  protein transport protein Sec16B isoform X1

    UniProtKB/TrEMBL
    A0A3Q1M6M1, F1MTY4
    Conserved Domains (1) summary
    cd09233
    Location:327 → 683
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

  5. XM_015475124.3 → XP_015330610.2  protein transport protein Sec16B isoform X1

    UniProtKB/TrEMBL
    A0A3Q1M6M1, F1MTY4
    Conserved Domains (1) summary
    cd09233
    Location:327 → 683
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

  6. XM_015475125.3 → XP_015330611.2  protein transport protein Sec16B isoform X1

    UniProtKB/TrEMBL
    A0A3Q1M6M1, F1MTY4
    Conserved Domains (1) summary
    cd09233
    Location:327 → 683
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

  7. XM_010813319.4 → XP_010811621.2  protein transport protein Sec16B isoform X4

    UniProtKB/TrEMBL
    A0A3Q1M6M1
    Conserved Domains (1) summary
    cd09233
    Location:212 → 568
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q75NY9.1 GenPept UniProtKB/Swiss-Prot:Q75NY9

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