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chrnd cholinergic receptor, nicotinic, delta (muscle) [ Danio rerio (zebrafish) ]

Gene ID: 404273, updated on 6-May-2021

Summary

Official Symbol
chrndprovided by ZNC
Official Full Name
cholinergic receptor, nicotinic, delta (muscle)provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-6665
See related
Ensembl:ENSDARG00000019342
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fa01e0; wu:fa01e01; zgc:110469
Orthologs
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Genomic context

See chrnd in Genome Data Viewer
Location:
chromosome: 24
Exon count:
12
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (25683024..25691020, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (25538073..25546069, complement)
103 previous assembly Zv9 (GCF_000002035.4) 24 NC_007135.5 (25968008..25975495)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene kelch like family member 34 Neighboring gene connector enhancer of kinase suppressor of Ras 2a Neighboring gene calcium/calmodulin-dependent protein kinase II inhibitor 2 Neighboring gene kelch-like family member 24b

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

General gene information

Markers

Homology

Clone Names

  • MGC110469

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables acetylcholine-gated cation-selective channel activity IEA
Inferred from Electronic Annotation
more info
 
enables acetylcholine-gated cation-selective channel activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables extracellular ligand-gated ion channel activity IEA
Inferred from Electronic Annotation
more info
 
enables ion channel activity IEA
Inferred from Electronic Annotation
more info
 
enables neurotransmitter receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in ion transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within ion transport IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within myofibril assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in nervous system process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in regulation of membrane potential IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
part_of acetylcholine-gated channel complex ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
located_in cell junction IEA
Inferred from Electronic Annotation
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in neuron projection IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in synapse IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
acetylcholine receptor subunit delta
Names
acetylcholine receptor delta subunit
cholinergic receptor, nicotinic, delta polypeptide
sofa potato
sop

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_207064.2NP_996947.1  acetylcholine receptor subunit delta precursor

    See identical proteins and their annotated locations for NP_996947.1

    Status: VALIDATED

    Source sequence(s)
    CU929293
    UniProtKB/TrEMBL
    Q75XT1
    Related
    ENSDARP00000016537.7, ENSDART00000015391.8
    Conserved Domains (3) summary
    TIGR00860
    Location:6493
    LIC; Cation transporter family protein
    pfam02931
    Location:25245
    Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
    pfam02932
    Location:252490
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    25683024..25691020 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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