U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

HOXB-AS3 HOXB cluster antisense RNA 3 [ Homo sapiens (human) ]

Gene ID: 404266, updated on 22-May-2022

Summary

Official Symbol
HOXB-AS3provided by HGNC
Official Full Name
HOXB cluster antisense RNA 3provided by HGNC
Primary source
HGNC:HGNC:40283
See related
Ensembl:ENSG00000233101 AllianceGenome:HGNC:40283
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in kidney (RPKM 9.1), colon (RPKM 5.3) and 13 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See HOXB-AS3 in Genome Data Viewer
Location:
17q21.32
Exon count:
8
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (48590420..48606414)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (49454010..49470007)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (46667782..46683776)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene homeobox B3 Neighboring gene homeobox B4 Neighboring gene microRNA 10a Neighboring gene homeobox B5 Neighboring gene homeobox B6 Neighboring gene homeobox B7 Neighboring gene homeobox B8

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
A genome-wide association meta-analysis identifies new childhood obesity loci.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • HOXB cluster antisense RNA 3 (non-protein coding)

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
 
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of pre-miRNA processing IDA
Inferred from Direct Assay
more info
PubMed 
involved_in protein stabilization IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of RNA splicing IMP
Inferred from Mutant Phenotype
more info
PubMed 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033201.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the reference transcript.
    Source sequence(s)
    BC010732, CF127739, DA741273, W39335
    Related
    ENST00000467155.6
  2. NR_033202.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two exons and contains two alternate 3' exons, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AA299267, BG196429, BG203609, DA741273
    Related
    ENST00000480872.5
  3. NR_033203.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) contains an alternate exon structure, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    BG196429, CB046509
    Related
    ENST00000429755.8
  4. NR_033204.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks an exon and contains an alternate 5' exon, resulting in a shorter transcript, comapred to variant 1.
    Source sequence(s)
    BC010732, BF431268, CB046509
    Related
    ENST00000487849.7
  5. NR_033205.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) contains an alternate exon structure, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    BG196429, BG203124, BG203609
    Related
    ENST00000481995.5
  6. NR_110329.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) contains an alternate exon structure, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC103702
    Related
    ENST00000492897.3
  7. NR_110330.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) contains an alternate exon structure, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    BG196429, BG203124, BG217847
    Related
    ENST00000474324.1
  8. NR_110331.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (8) contains an alternate exon structure, resulting in a longer transcript, compared to variant 1.
    Source sequence(s)
    BG196429, DA741273

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    48590420..48606414
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    49454010..49470007
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)