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traf4a tnf receptor-associated factor 4a [ Danio rerio (zebrafish) ]

Gene ID: 404045, updated on 6-May-2021

Summary

Official Symbol
traf4aprovided by ZNC
Official Full Name
tnf receptor-associated factor 4aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040308-1
See related
Ensembl:ENSDARG00000003963
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
tra; traf4l; zgc:77418
Orthologs
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Genomic context

See traf4a in Genome Data Viewer
Location:
chromosome: 15
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (15516612..15593263)
105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (15580590..15657241)
103 previous assembly Zv9 (GCF_000002035.4) 15 NC_007126.5 (14535627..14612278)

Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene NIMA-related kinase 8 Neighboring gene uncharacterized LOC108179291 Neighboring gene uncharacterized LOC110437897 Neighboring gene uncharacterized LOC797963

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Pathways from PubChem

General gene information

Homology

Clone Names

  • MGC77418

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
part_of plasma membrane signaling receptor complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
TNF receptor-associated factor 4a
Names
tnf receptor-associated factor 4, like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205762.1NP_991325.1  TNF receptor-associated factor 4a

    See identical proteins and their annotated locations for NP_991325.1

    Status: PROVISIONAL

    Source sequence(s)
    BC065969
    UniProtKB/TrEMBL
    Q7T1K2
    Related
    ENSDARP00000013849.8, ENSDART00000016024.9
    Conserved Domains (3) summary
    cd00162
    Location:1755
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    cd03781
    Location:308463
    MATH_TRAF4; Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter ...
    pfam02176
    Location:210269
    zf-TRAF; TRAF-type zinc finger

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007126.7 Reference GRCz11 Primary Assembly

    Range
    15516612..15593263
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394940.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    82914..160859
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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