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PTGDS prostaglandin D2 synthase [ Canis lupus familiaris (dog) ]

Gene ID: 403740, updated on 17-Aug-2024

Summary

Official Symbol
PTGDSprovided by VGNC
Official Full Name
prostaglandin D2 synthaseprovided by VGNC
Primary source
VGNC:VGNC:55792
See related
Ensembl:ENSCAFG00845005146
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
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Genomic context

See PTGDS in Genome Data Viewer
Location:
chromosome: 9
Exon count:
7
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (49525429..49528641, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (47860991..47864203, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (48647517..48650729, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (48301642..48304854, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (48600355..48603569, complement)

Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene PAXX non-homologous end joining factor Neighboring gene lipocalin like 1 Neighboring gene lipocalin 12 Neighboring gene complement C8 gamma chain

Genomic regions, transcripts, and products

Pathways from PubChem

General protein information

Preferred Names
prostaglandin-H2 D-isomerase
Names
PGD2 synthase
PGDS
PGDS2
glutathione-independent PGD synthase
glutathione-independent PGD synthetase
lipocalin-type prostaglandin-D synthase
prostaglandin D synthase
prostaglandin D2 synthase 21kDa (brain)
NP_001003131.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001003131.1NP_001003131.1  prostaglandin-H2 D-isomerase precursor

    See identical proteins and their annotated locations for NP_001003131.1

    Status: PROVISIONAL

    Source sequence(s)
    AB026988
    UniProtKB/Swiss-Prot
    Q9XS65
    UniProtKB/TrEMBL
    A0A8C0JNM0, A0A8C0M732
    Related
    ENSCAFP00845007248.1, ENSCAFT00845009214.1
    Conserved Domains (1) summary
    cd19419
    Location:30187
    lipocalin_L-PGDS; lipocalin-type prostaglandin D synthase

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051813.1 Reference ROS_Cfam_1.0

    Range
    49525429..49528641 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049269.1 Alternate UMICH_Zoey_3.1

    Range
    48301642..48304854 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

    Range
    48600355..48603569 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

    Range
    48647517..48650729 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    47860991..47864203 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)