Format

Send to:

Choose Destination

UBA52 ubiquitin A-52 residue ribosomal protein fusion product 1 [ Canis lupus familiaris (dog) ]

Gene ID: 403722, updated on 28-Sep-2021

Summary

Official Symbol
UBA52provided by VGNC
Official Full Name
ubiquitin A-52 residue ribosomal protein fusion product 1provided by VGNC
Primary source
VGNC:VGNC:59398
See related
EnsemblRapid:ENSCAFG00845020932
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
UBCEP2; UB-RPL40
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See UBA52 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
5
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 20 NC_051824.1 (44963325..44966217, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 20 NC_006602.4 (44391819..44394638, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 20 NC_049241.1 (44886089..44888908, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 20 NC_049280.1 (44200687..44203507, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 20 NC_049761.1 (44610646..44613463, complement)
105 previous assembly CanFam3.1 (GCF_000002285.3) 20 NC_006602.3 (44477128..44480023, complement)

Chromosome 20 - NC_051824.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 59 like Neighboring gene cytokine receptor like factor 1 Neighboring gene required for excision 1-B domain containing Neighboring gene KxDL motif containing 1 Neighboring gene FKBP prolyl isomerase 8

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Homology

Gene Ontology Provided by GO

Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
ubiquitin-60S ribosomal protein L40

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001128095.2NP_001121567.1  ubiquitin-60S ribosomal protein L40

    See identical proteins and their annotated locations for NP_001121567.1

    Status: VALIDATED

    Source sequence(s)
    DN353728, DN431670
    UniProtKB/Swiss-Prot
    P63050
    Related
    ENSCAFP00845028922.1, ENSCAFT00845036939.1
    Conserved Domains (2) summary
    cd01803
    Location:176
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
    pfam01020
    Location:79126
    Ribosomal_L40e; Ribosomal L40e family

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051824.1 Reference ROS_Cfam_1.0

    Range
    44963325..44966217 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038426361.1XP_038282289.1  ubiquitin-60S ribosomal protein L40 isoform X1

    Conserved Domains (2) summary
    cd01803
    Location:176
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
    pfam01020
    Location:79126
    Ribosomal_L40e; Ribosomal L40e family

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049280.1 Alternate UMICH_Zoey_3.1

    Range
    44200687..44203507 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049761.1 Alternate UNSW_CanFamBas_1.0

    Range
    44610646..44613463 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049241.1 Alternate UU_Cfam_GSD_1.0

    Range
    44886089..44888908 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    44391819..44394638 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center