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SOD1 superoxide dismutase 1 [ Canis lupus familiaris (dog) ]

Gene ID: 403559, updated on 5-Mar-2024

Summary

Official Symbol
SOD1provided by VGNC
Official Full Name
superoxide dismutase 1provided by VGNC
Primary source
VGNC:VGNC:46653
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Annotation information
Annotation category: suggests misassembly
Orthologs
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Genomic context

See SOD1 in Genome Data Viewer
Location:
chromosome: 31
Exon count:
5
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 31 NC_051835.1 (26654922..26662986)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 31 NC_006613.4 (26528080..26536169)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 31 NC_049252.1 (27118829..27126937)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 31 NC_049291.1 (26600785..26608887)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 31 NC_049772.1 (26612632..26620712)

Chromosome 31 - NC_051835.1Genomic Context describing neighboring genes Neighboring gene TIAM Rac1 associated GEF 1 Neighboring gene uncharacterized LOC119867106 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC102155229 Neighboring gene SR-related CTD associated factor 4 Neighboring gene uncharacterized LOC111093456

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables superoxide dismutase activity IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in removal of superoxide radicals IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
superoxide dismutase [Cu-Zn]
Names
Cu/Zn superoxide dismutase
superoxide dismutase 1 soluble
superoxide dismutase 1, soluble (amyotrophic lateral sclerosis 1 (adult))
NP_001003035.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001003035.1NP_001003035.1  superoxide dismutase [Cu-Zn]

    See identical proteins and their annotated locations for NP_001003035.1

    Status: PROVISIONAL

    Source sequence(s)
    AF346417
    UniProtKB/Swiss-Prot
    Q8WNN6
    UniProtKB/TrEMBL
    A0A8C0TSN1, A0A8I3PS52
    Conserved Domains (1) summary
    cd00305
    Location:3146
    Cu-Zn_Superoxide_Dismutase; Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the ...

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051835.1 Reference ROS_Cfam_1.0

    Range
    26654922..26662986
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049291.1 Alternate UMICH_Zoey_3.1

    Range
    26600785..26608887
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049772.1 Alternate UNSW_CanFamBas_1.0

    Range
    26612632..26620712
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049252.1 Alternate UU_Cfam_GSD_1.0

    Range
    27118829..27126937
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006613.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    26528080..26536169
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)