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UMOD uromodulin [ Canis lupus familiaris (dog) ]

Gene ID: 403510, updated on 7-Oct-2019

Summary

Official Symbol
UMODprovided by VGNC
Official Full Name
uromodulinprovided by VGNC
Primary source
VGNC:VGNC:54085
See related
Ensembl:ENSCAFG00000018021
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
THP
Orthologs

Genomic context

See UMOD in Genome Data Viewer
Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
105 current CanFam3.1 (GCF_000002285.3) 6 NC_006588.3 (24991459..25006735)

Chromosome 6 - NC_006588.3Genomic Context describing neighboring genes Neighboring gene acyl-coenzyme A synthetase ACSM2B, mitochondrial Neighboring gene acyl-CoA synthetase medium chain family member 5 Neighboring gene protein disulfide isomerase like, testis expressed Neighboring gene glycoprotein 2 Neighboring gene uncharacterized LOC111096498

Genomic regions, transcripts, and products

Genomic Sequence:
NC_006588.3 Chromosome 6 Reference CanFam3.1 Primary Assembly

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by GO

Function Evidence Code Pubs
calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
anchored component of membrane ISS
Inferred from Sequence or Structural Similarity
more info
 
apical plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
 
basolateral plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
 
ciliary membrane IEA
Inferred from Electronic Annotation
more info
 
cilium ISS
Inferred from Sequence or Structural Similarity
more info
 
extracellular region IEA
Inferred from Electronic Annotation
more info
 
spindle pole ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
uromodulin
Names
tamm-Horsfall urinary glycoprotein
uromodulin (uromucoid, Tamm-Horsfall glycoprotein)

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001003003.2NP_001003003.2  uromodulin preproprotein

    Status: VALIDATED

    Source sequence(s)
    AAEX03004477
    UniProtKB/TrEMBL
    F1PH06
    Related
    ENSCAFP00000026625.2, ENSCAFT00000028627.4
    Conserved Domains (3) summary
    smart00179
    Location:110151
    EGF_CA; Calcium-binding EGF-like domain
    smart00241
    Location:336585
    ZP; Zona pellucida (ZP) domain
    pfam07645
    Location:67105
    EGF_CA; Calcium-binding EGF domain

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CanFam3.1 Primary Assembly

Genomic

  1. NC_006588.3 Reference CanFam3.1 Primary Assembly

    Range
    24991459..25006735
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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