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LERFS lncRNA negative regulator of fibroblast-like synoviocyte migration, SYNCRIP interacting [ Homo sapiens (human) ]

Gene ID: 403323, updated on 12-Oct-2019

Summary

Official Symbol
LERFSprovided by HGNC
Official Full Name
lncRNA negative regulator of fibroblast-like synoviocyte migration, SYNCRIP interactingprovided by HGNC
Primary source
HGNC:HGNC:51182
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in testis (RPKM 2.4), thyroid (RPKM 2.1) and 25 other tissues See more

Genomic context

See LERFS in Genome Data Viewer
Location:
9q13
Exon count:
7
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (62857856..62898087, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (66523698..66553791, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene PTGER4P2-CDK2AP2P2 readthrough, transcribed pseudogene Neighboring gene cyclin dependent kinase 2 associated protein 2 pseudogene 2 Neighboring gene prostaglandin E receptor 4 pseudogene 2 Neighboring gene myosin VB pseudogene 2 Neighboring gene adhesion G protein-coupled receptor F5 pseudogene 1 Neighboring gene fibroblast growth factor 7 pseudogene 8 Neighboring gene uncharacterized LOC728673 Neighboring gene CNTNAP3 pseudogene 1 Neighboring gene uncharacterized LOC107987006

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • lowly expressed in rheumatoid fibroblast-like synoviocytes

Clone Names

  • FLJ97721, FLJ99937

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_122076.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AL512625
  2. NR_122077.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate splice site in the 5' terminal exon, lacks multiple 3' exons, and contains an alternate 3' terminal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AK000451

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    62857856..62898087 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_203449.1: Suppressed sequence

    Description
    NM_203449.1: This RefSeq was permanently suppressed because it is a nonsense-mediated decay (NMD) candidate.
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