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Banf2 barrier to autointegration factor 2 [ Mus musculus (house mouse) ]

Gene ID: 403171, updated on 31-Jan-2019

Summary

Official Symbol
Banf2provided by MGI
Official Full Name
barrier to autointegration factor 2provided by MGI
Primary source
MGI:MGI:2684961
See related
Ensembl:ENSMUSG00000037307
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Baf-L; Gm115; Baf-like; 4930517K23Rik
Expression
Restricted expression toward testis adult (RPKM 47.8) See more
Orthologs

Genomic context

See Banf2 in Genome Data Viewer
Location:
2; 2 G1
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (144033102..144073979)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (143858838..143899715)

Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene destrin Neighboring gene predicted gene, 33804 Neighboring gene ribosome binding protein 1 Neighboring gene barrier to autointegration factor 2, opposite strand Neighboring gene uncharacterized LOC108168800 Neighboring gene ribosomal protein S2 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
barrier-to-autointegration factor-like protein
Names
likely ortholog of H. sapiens Chromosome 20 open reading frame 179 (C20orf179)

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044750.1NP_001038215.1  barrier-to-autointegration factor-like protein

    See identical proteins and their annotated locations for NP_001038215.1

    Status: VALIDATED

    Source sequence(s)
    BC049628
    Consensus CDS
    CCDS16813.1
    UniProtKB/Swiss-Prot
    Q8BVR0
    Related
    ENSMUSP00000105659.1, ENSMUST00000110032.1
    Conserved Domains (1) summary
    cl03803
    Location:489
    BAF; Barrier to autointegration factor
  2. NM_207275.2NP_997158.1  barrier-to-autointegration factor-like protein

    See identical proteins and their annotated locations for NP_997158.1

    Status: VALIDATED

    Source sequence(s)
    AL928891
    Consensus CDS
    CCDS16813.1
    UniProtKB/Swiss-Prot
    Q8BVR0
    Related
    ENSMUSP00000046219.2, ENSMUST00000037722.8
    Conserved Domains (1) summary
    cl03803
    Location:489
    BAF; Barrier to autointegration factor

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

    Range
    144033102..144073979
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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