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AGER advanced glycosylation end-product specific receptor [ Canis lupus familiaris (dog) ]

Gene ID: 403168, updated on 26-Sep-2018

Summary

Official Symbol
AGERprovided by VGNC
Official Full Name
advanced glycosylation end-product specific receptorprovided by VGNC
Primary source
VGNC:VGNC:37699
See related
Ensembl:ENSCAFG00000000777
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
RAGE
Orthologs

Genomic context

See AGER in Genome Data Viewer
Location:
chromosome: 12
Exon count:
11
Annotation release Status Assembly Chr Location
105 current CanFam3.1 (GCF_000002285.3) 12 NC_006594.3 (1574251..1577410, complement)

Chromosome 12 - NC_006594.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102157280 Neighboring gene palmitoyl-protein thioesterase 2 Neighboring gene EGF like domain multiple 8 Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase 1 Neighboring gene ring finger protein 5 Neighboring gene PBX homeobox 2 Neighboring gene G protein signaling modulator 3 Neighboring gene notch 4

Genomic regions, transcripts, and products

Genomic Sequence:
NC_006594.3 Chromosome 12 Reference CanFam3.1 Primary Assembly

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General gene information

Markers

Homology

General protein information

Preferred Names
advanced glycosylation end product-specific receptor
Names
RAGE/AGER
advanced glycation end product receptor

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001048081.2NP_001041546.2  advanced glycosylation end product-specific receptor precursor

    Status: VALIDATED

    Source sequence(s)
    AAEX03008226, EU428802
    UniProtKB/TrEMBL
    C0IP06, Q20JV7
    Related
    ENSCAFP00000032821.2, ENSCAFT00000037333.3
    Conserved Domains (2) summary
    smart00410
    Location:250319
    IG_like; Immunoglobulin like
    pfam08205
    Location:125220
    C2-set_2; CD80-like C2-set immunoglobulin domain

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CanFam3.1 Primary Assembly

Genomic

  1. NC_006594.3 Reference CanFam3.1 Primary Assembly

    Range
    1574251..1577410 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_293655.3 RNA Sequence

    Related
    ENSCAFT00000001214.3
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