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Tcaf3 TRPM8 channel-associated factor 3 [ Mus musculus (house mouse) ]

Gene ID: 403088, updated on 3-Sep-2019

Summary

Official Symbol
Tcaf3provided by MGI
Official Full Name
TRPM8 channel-associated factor 3provided by MGI
Primary source
MGI:MGI:3042585
See related
Ensembl:ENSMUSG00000018656
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Eapa2; Fam115e
Expression
Low expression observed in reference dataset See more

Genomic context

See Tcaf3 in Genome Data Viewer
Location:
6; 6 B2.1
Exon count:
7
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (42587213..42597372, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (42537212..42547371, complement)

Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene olfactory receptor 455 Neighboring gene predicted gene, 38798 Neighboring gene TRPM8 channel-associated factor 2 Neighboring gene TRPM8 channel-associated factor 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
ion channel binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
negative regulation of anion channel activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive regulation of protein targeting to membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
TRPM8 channel-associated factor 3
Names
experimental autoimmune prostatitis antigen 2
family with sequence similarity 115, member E
protein FAM115E

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_203396.1NP_981933.1  TRPM8 channel-associated factor 3

    See identical proteins and their annotated locations for NP_981933.1

    Status: PROVISIONAL

    Source sequence(s)
    AY528666
    Consensus CDS
    CCDS20074.1
    UniProtKB/Swiss-Prot
    Q6QR59
    Related
    ENSMUSP00000064060.3, ENSMUST00000069023.3
    Conserved Domains (1) summary
    pfam13402
    Location:519880
    Peptidase_M60; Peptidase M60, enhancin and enhancin-like

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000072.6 Reference GRCm38.p6 C57BL/6J

    Range
    42587213..42597372 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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