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atm ATM serine/threonine kinase [ Danio rerio (zebrafish) ]

Gene ID: 403064, updated on 17-Nov-2020

Summary

Official Symbol
atmprovided by ZNC
Official Full Name
ATM serine/threonine kinaseprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040809-1
See related
Ensembl:ENSDARG00000002385
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
chunp96
Orthologs

Genomic context

See atm in Genome Data Viewer
Location:
chromosome: 15
Exon count:
62
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (6514964..6651278, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (6517631..6653955, complement)
103 previous assembly Zv9 (GCF_000002035.4) 15 NC_007126.5 (6399738..6503352, complement)

Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene Down syndrome cell adhesion molecule b Neighboring gene beta-secretase 2 Neighboring gene gap junction delta-2 protein-like Neighboring gene NOP53 ribosome biogenesis factor

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
kinase activity IDA
Inferred from Direct Assay
more info
PubMed 
kinase activity IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
protein serine/threonine kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 
transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
DNA damage checkpoint IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
DNA damage checkpoint IDA
Inferred from Direct Assay
more info
PubMed 
DNA damage checkpoint IEA
Inferred from Electronic Annotation
more info
 
DNA repair IEA
Inferred from Electronic Annotation
more info
 
cellular response to DNA damage stimulus IEA
Inferred from Electronic Annotation
more info
 
cellular response to DNA damage stimulus IMP
Inferred from Mutant Phenotype
more info
PubMed 
histone phosphorylation IEA
Inferred from Electronic Annotation
more info
 
intrinsic apoptotic signaling pathway in response to DNA damage IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
intrinsic apoptotic signaling pathway in response to DNA damage IGI
Inferred from Genetic Interaction
more info
PubMed 
negative regulation of TORC1 signaling IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
phosphorylation IEA
Inferred from Electronic Annotation
more info
 
regulation of G2/M transition of mitotic cell cycle IMP
Inferred from Mutant Phenotype
more info
PubMed 
response to ionizing radiation IEA
Inferred from Electronic Annotation
more info
 
telomere maintenance IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
telomere maintenance IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
serine-protein kinase ATM
Names
ataxia telangiectasia mutated
chunp9624
XP_002664603.3

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007126.7 Reference GRCz11 Primary Assembly

    Range
    6514964..6651278 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002664557.3XP_002664603.3  serine-protein kinase ATM

    UniProtKB/TrEMBL
    F1QJB6
    Related
    ENSDARP00000015167.8, ENSDART00000002922.9
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