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nr0b2a nuclear receptor subfamily 0, group B, member 2a [ Danio rerio (zebrafish) ]

Gene ID: 403010, updated on 17-Nov-2020

Summary

Official Symbol
nr0b2aprovided by ZNC
Official Full Name
nuclear receptor subfamily 0, group B, member 2aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-080403-1
See related
Ensembl:ENSDARG00000044685
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
SH; nr0; NR0B; Nr0b2; SHP-A; NR0B2-A; gb:bc058069
Orthologs

Genomic context

See nr0b2a in Genome Data Viewer
Location:
chromosome: 16
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (54875532..54880550)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (55167507..55172525)
103 previous assembly Zv9 (GCF_000002035.4) 16 NC_007127.5 (58399651..58404669)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene frizzled class receptor 6 Neighboring gene pleckstrin homology-like domain family B member 1 Neighboring gene poly(A) binding protein, cytoplasmic 1a Neighboring gene keratinocyte differentiation factor 1a Neighboring gene trophoblast glycoprotein-like

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
transcription corepressor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription factor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
circadian rhythm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
negative regulation of DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
negative regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
nuclear receptor subfamily 0 group B member 2a

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001256191.1NP_001243120.1  nuclear receptor subfamily 0 group B member 2a

    Status: PROVISIONAL

    Source sequence(s)
    BC058069
    UniProtKB/TrEMBL
    F8W3I2, Q6PEG7
    Related
    ENSDARP00000124074.1, ENSDART00000149795.2
    Conserved Domains (1) summary
    cd07349
    Location:28245
    NR_LBD_SHP; The ligand binding domain of DAX1 protein, a nuclear receptor lacking DNA binding domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    54875532..54880550
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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