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fgf13b fibroblast growth factor 13b [ Danio rerio (zebrafish) ]

Gene ID: 403003, updated on 17-Nov-2020

Summary

Official Symbol
fgf13bprovided by ZNC
Official Full Name
fibroblast growth factor 13bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1793
See related
Ensembl:ENSDARG00000056633
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fgf13; fgf13l; zgc:76868
Orthologs

Genomic context

See fgf13b in Genome Data Viewer
Location:
chromosome: 10
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (26716616..26744131, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (26754903..26782418, complement)
103 previous assembly Zv9 (GCF_000002035.4) 10 NC_007121.5 (27352109..27379634, complement)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene si:ch73-52f15.5 Neighboring gene teleost multiple tissue opsin 3b Neighboring gene proto-oncogene DBL-like Neighboring gene coagulation factor IXb Neighboring gene uncharacterized LOC110438858

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Homology

Clone Names

  • MGC76868

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
growth factor activity IEA
Inferred from Electronic Annotation
more info
 
sodium channel regulator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
nervous system development IEA
Inferred from Electronic Annotation
more info
 
regulation of voltage-gated sodium channel activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cell projection IEA
Inferred from Electronic Annotation
more info
 
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
dendrite IEA
Inferred from Electronic Annotation
more info
 
extracellular region IEA
Inferred from Electronic Annotation
more info
 
filopodium IEA
Inferred from Electronic Annotation
more info
 
growth cone IEA
Inferred from Electronic Annotation
more info
 
microtubule IEA
Inferred from Electronic Annotation
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
fibroblast growth factor 13b
Names
fibroblast growth factor 13, like

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001328492.1NP_001315421.1  fibroblast growth factor 13b isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    CU468967, CU928122
    Related
    ENSDARP00000003654.8, ENSDART00000020096.9
  2. NM_001328493.1NP_001315422.1  fibroblast growth factor 13b isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 5' coding region compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
    Source sequence(s)
    CU468967, CU928122
    UniProtKB/TrEMBL
    A0A0R4IGU4
    Related
    ENSDARP00000132775.1, ENSDART00000162710.3
    Conserved Domains (1) summary
    smart00442
    Location:22152
    FGF; Acidic and basic fibroblast growth factor family
  3. NM_205702.2NP_991265.1  fibroblast growth factor 13b isoform 3

    See identical proteins and their annotated locations for NP_991265.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start site compared to variant 1. The encoded isoform (3) has a shorter and distinct N-terminus compared to isoform 1.
    Source sequence(s)
    CU468967, CU928122
    UniProtKB/TrEMBL
    Q6NZS6
    Related
    ENSDARP00000150350.1, ENSDART00000188590.1
    Conserved Domains (1) summary
    smart00442
    Location:15145
    FGF; Acidic and basic fibroblast growth factor family

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    26716616..26744131 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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