Format

Send to:

Choose Destination

pdpk1b 3-phosphoinositide dependent protein kinase 1b [ Danio rerio (zebrafish) ]

Gene ID: 403000, updated on 12-Aug-2018

Summary

Official Symbol
pdpk1bprovided by ZNC
Official Full Name
3-phosphoinositide dependent protein kinase 1bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1820
See related
Ensembl:ENSDARG00000018285 Vega:OTTDARG00000032127
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
zgc:77318

Genomic context

See pdpk1b in Genome Data Viewer
Location:
chromosome: 24
Exon count:
14
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (37301852..37326125, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (37414132..37438405, complement)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2Ib Neighboring gene potassium channel tetramerization domain containing 5b Neighboring gene TSR3, 20S rRNA accumulation, homolog (S. cerevisiae) Neighboring gene N-acetylglucosamine-1-phosphate transferase subunit gamma

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Homology

Clone Names

  • MGC77318

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
protein kinase activity IEA
Inferred from Electronic Annotation
more info
 
protein serine/threonine kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
intracellular signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
peptidyl-serine phosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
3-phosphoinositide-dependent protein kinase 1
NP_991262.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205699.1NP_991262.1  3-phosphoinositide-dependent protein kinase 1

    See identical proteins and their annotated locations for NP_991262.1

    Status: PROVISIONAL

    Source sequence(s)
    BC065959
    UniProtKB/TrEMBL
    Q6NZV1
    Related
    ENSDARP00000019085.7, OTTDARP00000035446, ENSDART00000003789.8, OTTDART00000044797
    Conserved Domains (3) summary
    smart00220
    Location:60320
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd01262
    Location:423529
    PH_PDK1; 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain
    cd05581
    Location:58320
    STKc_PDK1; Catalytic domain of the Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    37301852..37326125 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center