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nr1d2a nuclear receptor subfamily 1, group D, member 2a [ Danio rerio (zebrafish) ]

Gene ID: 402815, updated on 3-Oct-2019

Summary

Official Symbol
nr1d2aprovided by ZNC
Official Full Name
nuclear receptor subfamily 1, group D, member 2aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040504-1
See related
Ensembl:ENSDARG00000003820
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
NR1D2-A; reverbb1; Reverbbeta-A

Genomic context

See nr1d2a in Genome Data Viewer
Location:
chromosome: 16
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (50089417..50111057)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (49879757..49906737)
103 previous assembly Zv9 (GCF_000002035.4) 16 NC_007127.5 (53626437..53636413)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 385D Neighboring gene ubiquitin-conjugating enzyme E2E 2 Neighboring gene si:ch211-231m23.4 Neighboring gene NIMA-related kinase 10

Genomic regions, transcripts, and products

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 
sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
steroid hormone receptor activity IEA
Inferred from Electronic Annotation
more info
 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
circadian regulation of gene expression IDA
Inferred from Direct Assay
more info
PubMed 
regulation of transcription, DNA-templated IDA
Inferred from Direct Assay
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
nuclear receptor subfamily 1, group D, member 2a
Names
Rev-Erb Beta 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001130592.2NP_001124064.2  nuclear receptor subfamily 1, group D, member 2a

    Status: VALIDATED

    Source sequence(s)
    CU855686, EH436346, FO744853
    UniProtKB/TrEMBL
    F1QIC9
    Related
    ENSDARP00000129310.2, ENSDART00000153675.3
    Conserved Domains (2) summary
    cd07166
    Location:81169
    NR_DBD_REV_ERB; DNA-binding domain of REV-ERB receptor-like is composed of two C4-type zinc fingers
    cl11397
    Location:314502
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    50089417..50111057
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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