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IFITM10 interferon induced transmembrane protein 10 [ Homo sapiens (human) ]

Gene ID: 402778, updated on 11-Sep-2019

Summary

Official Symbol
IFITM10provided by HGNC
Official Full Name
interferon induced transmembrane protein 10provided by HGNC
Primary source
HGNC:HGNC:40022
See related
Ensembl:ENSG00000244242 MIM:618293
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
DSPA3
Expression
Biased expression in adrenal (RPKM 13.9), brain (RPKM 6.2) and 11 other tissues See more
Orthologs

Genomic context

See IFITM10 in Genome Data Viewer
Location:
11p15.5
Exon count:
3
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 11 NC_000011.10 (1732406..1750595, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (1753640..1771824, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2708 Neighboring gene keratin associated protein 5-6 Neighboring gene skeletal muscle cis-regulatory module in IFITM10 intron Neighboring gene cathepsin D Neighboring gene uncharacterized LOC105376517

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Potential readthrough

Included gene: CTSD

Homology

Clone Names

  • FLJ12231, FLJ76511

Gene Ontology Provided by GOA

Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
interferon-induced transmembrane protein 10
Names
dispanin subfamily A member 3

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001170820.4NP_001164291.2  interferon-induced transmembrane protein 10

    See identical proteins and their annotated locations for NP_001164291.2

    Status: VALIDATED

    Source sequence(s)
    AC068580, BQ183689, BQ669640, DB219779
    Consensus CDS
    CCDS53593.2
    UniProtKB/Swiss-Prot
    A6NMD0
    Related
    ENSP00000344430.4, ENST00000340134.5
    Conserved Domains (1) summary
    pfam04505
    Location:145216
    CD225; Interferon-induced transmembrane protein

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p13 Primary Assembly

    Range
    1732406..1750595 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_2

Genomic

  1. NT_187657.1 Reference GRCh38.p13 ALT_REF_LOCI_2

    Range
    206152..209195 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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