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CFAP99 cilia and flagella associated protein 99 [ Homo sapiens (human) ]

Gene ID: 402160, updated on 13-May-2022

Summary

Official Symbol
CFAP99provided by HGNC
Official Full Name
cilia and flagella associated protein 99provided by HGNC
Primary source
HGNC:HGNC:51180
See related
Ensembl:ENSG00000206113 AllianceGenome:HGNC:51180
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to be located in motile cilium. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis (RPKM 5.5), lung (RPKM 0.5) and 1 other tissue See more
Orthologs
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Genomic context

See CFAP99 in Genome Data Viewer
Location:
4p16.3
Exon count:
16
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (2418955..2463002)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (2417709..2461661)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (2420682..2464729)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene zinc finger FYVE-type containing 28 Neighboring gene uncharacterized LOC124900649 Neighboring gene uncharacterized LOC105374352 Neighboring gene uncharacterized LOC107986249 Neighboring gene uncharacterized LOC105374353 Neighboring gene uncharacterized LOC107986250 Neighboring gene ring finger protein 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in motile cilium IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
cilia- and flagella-associated protein 99

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001193282.4NP_001180211.2  cilia- and flagella-associated protein 99

    Status: VALIDATED

    Source sequence(s)
    AL645924, KF459867
    Consensus CDS
    CCDS75092.1
    UniProtKB/TrEMBL
    A0A087WWY8
    Conserved Domains (1) summary
    pfam16031
    Location:194234
    TonB_N; TonB N-terminal region

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    2418955..2463002
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047415685.1XP_047271641.1  cilia- and flagella-associated protein 99 isoform X1

    Related
    ENSP00000488922.1, ENST00000635017.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    2417709..2461661
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)