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CD99P1 CD99 molecule pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 401577, updated on 25-Oct-2022

Summary

Official Symbol
CD99P1provided by HGNC
Official Full Name
CD99 molecule pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:7083
See related
Ensembl:ENSG00000291040 AllianceGenome:HGNC:7083
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MIC2R; CD99L1; CXYorf12; NCRNA00103
Expression
Ubiquitous expression in bone marrow (RPKM 1.0), skin (RPKM 0.9) and 25 other tissues See more
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Genomic context

See CD99P1 in Genome Data Viewer
Location:
X;Y
Exon count:
11
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (2609265..2657229)
110 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (2609265..2657229)
110 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (2222371..2270615)
110 current T2T-CHM13v2.0 (GCF_009914755.1) Y NC_060948.1 (2286167..2334396)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (2527306..2575270)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (2477306..2525270)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101928092 Neighboring gene long intergenic non-protein coding RNA 102 Neighboring gene microRNA 6089 Neighboring gene CD99 molecule (Xg blood group) Neighboring gene Xg glycoprotein (Xg blood group)

Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene dehydrogenase/reductase X-linked Neighboring gene zinc finger BED-type containing 1 Neighboring gene uncharacterized LOC101928092 Neighboring gene long intergenic non-protein coding RNA 102 Neighboring gene microRNA 6089 Neighboring gene CD99 molecule (Xg blood group) Neighboring gene XG pseudogene, Y-linked 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • CD99 antigen-like 1
  • CD99 molecule-like 1, pseudogene
  • MIC2-related

Clone Names

  • FLJ43159

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033380.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC097314
    Related
    ENST00000435581.7
  2. NR_033381.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) includes an alternate internal exon and uses an alternate 3' exon, compared to variant 1.
    Source sequence(s)
    AC097314
    Related
    ENST00000430562.7

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    2609265..2657229
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

    Range
    2609265..2657229
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    2222371..2270615
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060948.1 Alternate T2T-CHM13v2.0

    Range
    2286167..2334396
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)