Format

Send to:

Choose Destination

LCNL1 lipocalin like 1 [ Homo sapiens (human) ]

Gene ID: 401562, updated on 5-Jan-2022

Summary

Official Symbol
LCNL1provided by HGNC
Official Full Name
lipocalin like 1provided by HGNC
Primary source
HGNC:HGNC:34436
See related
Ensembl:ENSG00000214402
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to enable small molecule binding activity. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Biased expression in testis (RPKM 5.4), brain (RPKM 2.5) and 8 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LCNL1 in Genome Data Viewer
Location:
9q34.3
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (136982993..136985758)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (139877445..139880210)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2692 Neighboring gene prostaglandin D2 synthase Neighboring gene PAXX non-homologous end joining factor Neighboring gene chloride intracellular channel 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Potential readthrough

Included gene: PTGDS

Homology

Clone Names

  • FLJ45224

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables small molecule binding IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_207510.4NP_997393.3  lipocalin-like 1 protein

    See identical proteins and their annotated locations for NP_997393.3

    Status: VALIDATED

    Source sequence(s)
    AL807752, BC062468
    Consensus CDS
    CCDS43908.1
    UniProtKB/Swiss-Prot
    Q6ZST4
    Related
    ENSP00000386162.2, ENST00000408973.3
    Conserved Domains (1) summary
    pfam00061
    Location:1104
    Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    136982993..136985758
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center