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SNX30 sorting nexin family member 30 [ Homo sapiens (human) ]

Gene ID: 401548, updated on 10-Oct-2019

Summary

Official Symbol
SNX30provided by HGNC
Official Full Name
sorting nexin family member 30provided by HGNC
Primary source
HGNC:HGNC:23685
See related
Ensembl:ENSG00000148158
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ATG24A
Expression
Broad expression in kidney (RPKM 13.0), lung (RPKM 12.9) and 24 other tissues See more
Orthologs

Genomic context

See SNX30 in Genome Data Viewer
Location:
9q32
Exon count:
13
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (112749723..112875847)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (115511911..115637267)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene INTS3 and NABP interacting protein Neighboring gene uncharacterized LOC107987117 Neighboring gene uncharacterized LOC107987118 Neighboring gene solute carrier family 46 member 2 Neighboring gene uncharacterized LOC112268054

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ26481, FLJ34280, FLJ35589, FLJ44686, FLJ45069, FLJ46877

Gene Ontology Provided by GOA

Function Evidence Code Pubs
phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
protein transport IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012994.2NP_001013012.1  sorting nexin-30

    See identical proteins and their annotated locations for NP_001013012.1

    Status: VALIDATED

    Source sequence(s)
    AA401207, AK127013, AL139041, AL360235, AL390067, BG699098, BX367137
    Consensus CDS
    CCDS43865.1
    UniProtKB/Swiss-Prot
    Q5VWJ9
    Related
    ENSP00000363349.3, ENST00000374232.8
    Conserved Domains (2) summary
    cd06860
    Location:91206
    PX_SNX7_30_like; The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30
    cd07667
    Location:190429
    BAR_SNX30; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    112749723..112875847
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024447544.1XP_024303312.1  sorting nexin-30 isoform X3

    Conserved Domains (2) summary
    cd06860
    Location:1102
    PX_SNX7_30_like; The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30
    cl12013
    Location:86314
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
  2. XM_011518691.2XP_011516993.1  sorting nexin-30 isoform X1

    Conserved Domains (2) summary
    cd06860
    Location:91206
    PX_SNX7_30_like; The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30
    cd07667
    Location:190418
    BAR_SNX30; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30
  3. XM_017014716.2XP_016870205.1  sorting nexin-30 isoform X2

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