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C9orf152 chromosome 9 open reading frame 152 [ Homo sapiens (human) ]

Gene ID: 401546, updated on 29-Mar-2018

Summary

Official Symbol
C9orf152provided by HGNC
Official Full Name
chromosome 9 open reading frame 152provided by HGNC
Primary source
HGNC:HGNC:31455
See related
Ensembl:ENSG00000188959 Vega:OTTHUMG00000020478
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
bA470J20.2
Expression
Biased expression in colon (RPKM 16.0), stomach (RPKM 13.2) and 9 other tissues See more
Orthologs

Genomic context

See C9orf152 in Genome Data Viewer
Location:
9q31.3
Exon count:
2
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 9 NC_000009.12 (110199561..110208133, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (112961841..112970413, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376217 Neighboring gene transfer RNA-Arg (TCG) 6-1 Neighboring gene thioredoxin Neighboring gene uncharacterized LOC107987114

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

General gene information

Markers

Homology

Clone Names

  • MGC131682

General protein information

Preferred Names
uncharacterized protein C9orf152

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012993.2NP_001013011.2  uncharacterized protein C9orf152

    See identical proteins and their annotated locations for NP_001013011.2

    Status: VALIDATED

    Source sequence(s)
    AK290278, AL353598, BC110807, CD722791
    Consensus CDS
    CCDS35102.2
    UniProtKB/Swiss-Prot
    Q5JTZ5
    UniProtKB/TrEMBL
    A8K2L3
    Related
    ENSP00000383456.4, OTTHUMP00000021886, ENST00000400613.4, OTTHUMT00000053602
    Conserved Domains (1) summary
    pfam15733
    Location:39161
    DUF4682; Domain of unknown function (DUF4682)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p12 Primary Assembly

    Range
    110199561..110208133 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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