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Taf6 TBP-associated factor 6 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 40134, updated on 28-Oct-2024

Summary

Official Symbol
Taf6provided by FlyBase
Official Full Name
TBP-associated factor 6provided by FlyBase
Primary source
FLYBASE:FBgn0010417
Locus tag
Dmel_CG32211
See related
AllianceGenome:FB:FBgn0010417
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG32211; CG9348; d60; dme-TAFII60; Dmel\CG32211; dmTAF6; dTAF6; dTAF62; dTAFII62; dTAF[[II]]262; dTAF[[II]]60; dTAF[[II]]62; l(3)76BDf; p62; SR3-4B; TAF; Taf-6; taf6; TAF6; taf60; Taf60; TAF60; TAF60/62; Taf62; TAFII60; TAFII60(62); TAFII62; TAF[[II]]; Taf[[II]]60; TAF[[II]]60; TAF[[II]]60/62; TAF[[II]]62; TFIID; TFIID 62
Summary
Contributes to RNA polymerase II general transcription initiation factor activity. Involved in transcription by RNA polymerase II. Located in nucleus. Part of transcription factor TFIID complex. Is expressed in organism and spermatozoon. Orthologous to human TAF6 (TATA-box binding protein associated factor 6). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
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Genomic context

See Taf6 in Genome Data Viewer
Location:
76B9-76B9; 3-45 cM
Exon count:
4
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (19599088..19601382)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (19592188..19594482)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene absent, small, or homeotic discs 1 Neighboring gene uncharacterized protein Neighboring gene lush

Genomic regions, transcripts, and products

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by FlyBase

Component Evidence Code Pubs
part_of SAGA complex IEA
Inferred from Electronic Annotation
more info
 
part_of SLIK (SAGA-like) complex IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
part_of transcription factor TFIID complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of transcription factor TFIID complex IDA
Inferred from Direct Assay
more info
PubMed 
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
 
part_of transcription factor TFIID complex IPI
Inferred from Physical Interaction
more info
PubMed 
part_of transcription factor TFIID complex ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 

General protein information

Preferred Names
TBP-associated factor 6
Names
CG32211-PA
CG32211-PB
TBP associated factor 60
TBP-Associated factor 6
TBP-associated factor
TBP-associated factor 60
TBP-associated factor 60kD
Taf6-PA
Taf6-PB
suppressor of Ras85D 3-4B

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    19599088..19601382
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_079437.4NP_524161.2  TBP-associated factor 6, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_524161.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P49847, Q961B6, Q9VW16
    Related
    FBpp0074709
    Conserved Domains (1) summary
    cd08050
    Location:22383
    TAF6; TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
  2. NM_001275127.1NP_001262056.1  TBP-associated factor 6, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001262056.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    M9PG32
    Conserved Domains (1) summary
    cd08050
    Location:22383
    TAF6; TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex