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TRAM2-AS1 TRAM2 antisense RNA 1 (head to head) [ Homo sapiens (human) ]

Gene ID: 401264, updated on 5-Sep-2021

Summary

Official Symbol
TRAM2-AS1provided by HGNC
Official Full Name
TRAM2 antisense RNA 1 (head to head)provided by HGNC
Primary source
HGNC:HGNC:48663
See related
Ensembl:ENSG00000225791
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in thyroid (RPKM 4.4), kidney (RPKM 3.4) and 25 other tissues See more
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Genomic context

See TRAM2-AS1 in Genome Data Viewer
Location:
6p12.2
Exon count:
3
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (52577202..52583993)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (52442000..52448791)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene EF-hand domain containing 1 Neighboring gene translocation associated membrane protein 2 Neighboring gene uncharacterized LOC107986603 Neighboring gene FOXA motif-containing MPRA enhancer 62 Neighboring gene SH3 domain binding glutamate rich protein like 3 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_103446.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AA730121, AK095117, AL049611, CX787946
    Related
    ENST00000606714.6
  2. NR_103447.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal segment in the 5' region, compared to variant 1.
    Source sequence(s)
    AA730121, AK095117, AL049611, BE741421, CX787946, DB479639
    Related
    ENST00000666605.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    52577202..52583993
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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