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CRIP3 cysteine rich protein 3 [ Homo sapiens (human) ]

Gene ID: 401262, updated on 3-Apr-2018
Official Symbol
CRIP3provided by HGNC
Official Full Name
cysteine rich protein 3provided by HGNC
Primary source
HGNC:HGNC:17751
See related
Ensembl:ENSG00000146215 Vega:OTTHUMG00000014727
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TLP; TLP-A; bA480N24.2
Expression
Biased expression in liver (RPKM 2.8), heart (RPKM 2.6) and 13 other tissues See more
Orthologs
See CRIP3 in Genome Data Viewer
Location:
6p21.1
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 6 NC_000006.12 (43305472..43312308, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (43273211..43277005, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 Neighboring gene tau tubulin kinase 1 Neighboring gene uncharacterized LOC105375064 Neighboring gene solute carrier family 22 member 7 Neighboring gene ribosomal protein L12 pseudogene 47 Neighboring gene ribosomal protein L34 pseudogene 14 Neighboring gene zinc finger protein 318 Neighboring gene ribosomal protein S2 pseudogene 28

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
cysteine-rich protein 3
Names
CRP-3
chromosome 6 LIM domain only protein
h6LIMo
thymus LIM protein TLP-A

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_206922.2NP_996805.2  cysteine-rich protein 3

    See identical proteins and their annotated locations for NP_996805.2

    Status: VALIDATED

    Source sequence(s)
    AI042209, AY555741, CN282994
    Consensus CDS
    CCDS4894.2
    UniProtKB/Swiss-Prot
    Q6Q6R5
    Related
    ENSP00000361650.3, OTTHUMP00000016433, ENST00000372569.7, OTTHUMT00000040594
    Conserved Domains (2) summary
    cd09476
    Location:558
    LIM1_TLP; The first LIM domain of thymus LIM protein (TLP)
    cd09477
    Location:124177
    LIM2_TLP; The second LIM domain of thymus LIM protein (TLP)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p12 Primary Assembly

    Range
    43305472..43312308 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017010857.2XP_016866346.1  cysteine-rich protein 3 isoform X5

  2. XM_024446442.1XP_024302210.1  cysteine-rich protein 3 isoform X4

    Conserved Domains (2) summary
    cd09476
    Location:558
    LIM1_TLP; The first LIM domain of thymus LIM protein (TLP)
    cd09477
    Location:80133
    LIM2_TLP; The second LIM domain of thymus LIM protein (TLP)
  3. XM_017010856.2XP_016866345.1  cysteine-rich protein 3 isoform X2

  4. XM_011514609.3XP_011512911.1  cysteine-rich protein 3 isoform X3

    See identical proteins and their annotated locations for XP_011512911.1

    UniProtKB/Swiss-Prot
    Q6Q6R5
    Conserved Domains (2) summary
    cd09476
    Location:558
    LIM1_TLP; The first LIM domain of thymus LIM protein (TLP)
    cl02475
    Location:124165
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
  5. XM_005249103.4XP_005249160.1  cysteine-rich protein 3 isoform X1

    See identical proteins and their annotated locations for XP_005249160.1

    UniProtKB/Swiss-Prot
    Q6Q6R5
    Related
    ENSP00000274990.4, OTTHUMP00000195154, ENST00000274990.4
    Conserved Domains (2) summary
    cd09476
    Location:558
    LIM1_TLP; The first LIM domain of thymus LIM protein (TLP)
    cd09477
    Location:124177
    LIM2_TLP; The second LIM domain of thymus LIM protein (TLP)
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