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LINC01011 long intergenic non-protein coding RNA 1011 [ Homo sapiens (human) ]

Gene ID: 401232, updated on 13-May-2022

Summary

Official Symbol
LINC01011provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1011provided by HGNC
Primary source
HGNC:HGNC:33812
See related
AllianceGenome:HGNC:33812
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in thyroid (RPKM 2.9), testis (RPKM 2.6) and 25 other tissues See more
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Genomic context

See LINC01011 in Genome Data Viewer
Location:
6p25.2
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (2987967..2991171)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (2856863..2860094)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (2988201..2991405)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene serpin family B member 6 Neighboring gene SERPINB6-LINC01011 intergenic CAGE-defined mid-level expression enhancer Neighboring gene N-ribosyldihydronicotinamide:quinone reductase 2 Neighboring gene HIV-1 Tat specific factor 1 pseudogene 2 Neighboring gene uncharacterized LOC101927759 Neighboring gene Sharpr-MPRA regulatory region 12329

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026856.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL133351, BQ025114, DA076107

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    2987967..2991171
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    2856863..2860094
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_207495.2: Suppressed sequence

    Description
    NM_207495.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
  2. NR_026855.1: Suppressed sequence

    Description
    NR_026855.1: This RefSeq was removed because currently there is insufficient support for the transcript.