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LINC01060 long intergenic non-protein coding RNA 1060 [ Homo sapiens (human) ]

Gene ID: 401164, updated on 17-Jun-2024

Summary

Official Symbol
LINC01060provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1060provided by HGNC
Primary source
HGNC:HGNC:49081
See related
Ensembl:ENSG00000249378 AllianceGenome:HGNC:49081
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in kidney (RPKM 1.7) and testis (RPKM 0.3) See more
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Genomic context

See LINC01060 in Genome Data Viewer
Location:
4q35.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (188455578..188601908)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (191802452..191954895)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (189376732..189523062)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377608 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:189320726-189321477 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:189326005-189327204 Neighboring gene interactor of little elongation complex ELL subunit 2 pseudogene 1 Neighboring gene uncharacterized LOC105377609 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:189365717-189366916 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:189369247-189370446 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:189406194-189407393 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:189487077-189487281 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:189579916-189580416 Neighboring gene RNA, U7 small nuclear 192 pseudogene Neighboring gene heat shock protein family A (Hsp70) member 8 pseudogene 12

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033869.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI264253, AK095968, DA579097
    Related
    ENST00000510005.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    188455578..188601908
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187545.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    114156..144439
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    191802452..191954895
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)